Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada.
PLoS One. 2013;8(4):e60896. doi: 10.1371/journal.pone.0060896. Epub 2013 Apr 1.
Glucokinase (GCK) plays an important role in the regulation of carbohydrate metabolism. In the liver, phosphorylation of glucose to glucose-6-phosphate by GCK is the first step for both glycolysis and glycogen synthesis. However, some vertebrate species are deficient in GCK activity in the liver, despite containing GCK genes that appear to be compatible with function in their genomes. Glucokinase regulatory protein (GCKR) is the most important post-transcriptional regulator of GCK in the liver; it participates in the modulation of GCK activity and location depending upon changes in glucose levels. In experimental models, loss of GCKR has been shown to associate with reduced hepatic GCK protein levels and activity.
METHODOLOGY/PRINCIPAL FINDINGS: GCKR genes and GCKR-like sequences were identified in the genomes of all vertebrate species with available genome sequences. The coding sequences of GCKR and GCKR-like genes were identified and aligned; base changes likely to disrupt coding potential or splicing were also identified.
CONCLUSIONS/SIGNIFICANCE: GCKR genes could not be found in the genomes of 9 vertebrate species, including all birds. In addition, in multiple mammalian genomes, whereas GCKR-like gene sequences could be identified, these genes could not predict a functional protein. Vertebrate species that were previously reported to be deficient in hepatic GCK activity were found to have deleted (birds and lizard) or mutated (mammals) GCKR genes. Our results suggest that mutation of the GCKR gene leads to hepatic GCK deficiency due to the loss of the stabilizing effect of GCKR.
葡萄糖激酶(GCK)在碳水化合物代谢调节中发挥着重要作用。在肝脏中,GCK 将葡萄糖磷酸化为葡萄糖-6-磷酸,这是糖酵解和糖原合成的第一步。然而,一些脊椎动物物种的肝脏缺乏 GCK 活性,尽管它们的基因组中含有似乎与功能兼容的 GCK 基因。葡萄糖激酶调节蛋白(GCKR)是肝脏中 GCK 的最重要的转录后调节因子;它根据葡萄糖水平的变化参与 GCK 活性和位置的调节。在实验模型中,已经表明 GCKR 的缺失与肝 GCK 蛋白水平和活性降低有关。
方法/主要发现:在所有具有可用基因组序列的脊椎动物物种的基因组中都鉴定出了 GCKR 基因和 GCKR 样序列。鉴定并比对了 GCKR 和 GCKR 样基因的编码序列;还鉴定了可能破坏编码潜力或剪接的碱基变化。
结论/意义:在 9 种脊椎动物物种(包括所有鸟类)的基因组中无法找到 GCKR 基因。此外,在多个哺乳动物基因组中,可以鉴定出 GCKR 样基因序列,但这些基因不能预测功能性蛋白质。先前报道缺乏肝 GCK 活性的脊椎动物物种被发现已缺失(鸟类和蜥蜴)或突变(哺乳动物)了 GCKR 基因。我们的研究结果表明,由于 GCKR 的稳定作用丧失,GCKR 基因的突变导致肝 GCK 缺乏。