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评估阳离子卟啉与 DNA 核苷酸对相互作用时的光敏化性质。

Assessment of the photosensitization properties of cationic porphyrins in interaction with DNA nucleotide pairs.

机构信息

Laboratorio de Química Teórica, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Casilla 40, Correo 33, Santiago, Chile.

出版信息

J Mol Model. 2013 Jul;19(7):2913-24. doi: 10.1007/s00894-013-1822-z. Epub 2013 Apr 14.

DOI:10.1007/s00894-013-1822-z
PMID:23584553
Abstract

We present a theoretical assessment of the photosensitization properties of meso-mono(N-methylpyridyl) triphenylporphyrin (1, MmPyP(+)), which interacts with DNA nucleotide pairs [adenine (A)-thymine (T); guanine (G)-cytosine (C)] via an external binding mode. The photosensitization properties of the arrangements 1A, 1T, 1G and 1C were investigated. A set of density functionals (B3LYP, PBE0, CAM-B3LYP, M06-2X, B97D) with the 6-31G(d) basis set was used to calculate the electronic absorption spectra in solution (water) following TD-DFT methodology. In all the arrangements, with the exception of 1C, the functional PBE0 produced the lowest deviation of the Soret band (0.1-0.2 eV). Using this functional, we show that the porphyrin-nucleotide interaction is stabilized, as reflected by a larger HOMO-LUMO gap than free porphyrin. A more important effect of the interaction corresponds to the red-shift of the Soret band of MmPyP(+), which is in agreement with experimental results. This behavior could be explained by the higher symmetry found in arrangements with a lower dipole moment, and by the more symmetrical distribution of electronic density along the molecular orbitals, which provokes electronic transitions of lower energy. The structural model allowed us to show that MmPyP(+) improves the characteristics as a photosensitizer when it interacts with nucleotide pairs due to the longer wavelength required for the Soret band. Results obtained for porphyrins with larger monocationic substituents (2, MmAP+; 3, MONPP+) do not lead to the same behavior. Although the structural model is insufficient to describe porphyrin photosensitization, it suggests that improvements in this property are produced by the inclusion of a cationic charge in the pyridyl ring and a smaller size of the substituent leading to a better communication in the porphyrin-nucleotide pair.

摘要

我们提出了一种理论评估方法,用于研究介单(N-甲基吡啶基)三苯基卟啉(1,MmPyP(+))与 DNA 核苷酸对[腺嘌呤(A)-胸腺嘧啶(T);鸟嘌呤(G)-胞嘧啶(C)]通过外部结合模式相互作用的光敏化性质。我们研究了排列 1A、1T、1G 和 1C 的光敏化性质。使用一组密度泛函(B3LYP、PBE0、CAM-B3LYP、M06-2X、B97D)和 6-31G(d)基组,采用 TD-DFT 方法计算了溶液(水)中的电子吸收光谱。在所有排列中,除了 1C 之外,功能 PBE0 产生了卟啉-核苷酸相互作用的最低 Soret 带(0.1-0.2 eV)偏差。使用此功能,我们表明,与游离卟啉相比,卟啉-核苷酸相互作用得到了稳定,这反映在 HOMO-LUMO 间隙更大。相互作用的更重要影响对应于 MmPyP(+)的 Soret 带的红移,这与实验结果一致。这种行为可以通过在具有较低偶极矩的排列中发现的更高对称性和分子轨道中电子密度更对称的分布来解释,这导致了较低能量的电子跃迁。结构模型使我们能够表明,由于 Soret 带所需的波长更长,当 MmPyP(+)与核苷酸对相互作用时,它可以改善作为光敏剂的特性。对于具有较大单阳离子取代基(2,MmAP+;3,MONPP+)的卟啉,得到的结果不会产生相同的行为。尽管结构模型不足以描述卟啉的光敏化,但它表明,通过在吡啶环中包含阳离子电荷和取代基的尺寸更小,可以改善该性质,从而在卟啉-核苷酸对中实现更好的通信。

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本文引用的文献

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A Base-Sugar-Phosphate Three-Layer ONIOM Model for Cation Binding:  Relative Binding Affinities of Alkali Metal Ions for Phosphate Anion in DNA.用于阳离子结合的碱基-糖-磷酸三层ONIOM模型:碱金属离子与DNA中磷酸根阴离子的相对结合亲和力
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