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赋予波多黎各鹦鹉(Amazona vittata)基因组能力。

Genome empowerment for the Puerto Rican parrot - Amazona vittata.

机构信息

Theodosius Dobzhansky Center for Genome Bioinformatics, St, Petersburg State University, St, Petersburg, Russia.

出版信息

Gigascience. 2012 Sep 28;1(1):13. doi: 10.1186/2047-217X-1-13.

DOI:10.1186/2047-217X-1-13
PMID:23587407
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3626504/
Abstract

A unique community-funded project in Puerto Rico has launched whole-genome sequencing of the critically endangered Puerto Rican Parrot (Amazona vittata), with interpretation by genome bioinformaticians and students, and deposition into public online databases. This is the first article that focuses on the whole genome of a parrot species, one endemic to the USA and recently threatened with extinction. It provides invaluable conservation tools and a vivid example of hopeful prospects for future genome assessment of so many new species. It also demonstrates inventive ways for smaller institutions to contribute to a field largely considered the domain of large sequencing centers.

摘要

波多黎各的一个独特的社区资助项目已经启动了濒危的波多黎各鹦鹉(Amazona vittata)的全基因组测序工作,由基因组生物信息学家和学生进行解释,并将结果存入公共在线数据库。这是第一篇专注于美国特有、最近濒临灭绝的鹦鹉物种全基因组的文章。它为保护工作提供了宝贵的工具,也为未来对许多新物种进行基因组评估提供了充满希望的范例。它还展示了较小的机构为这个被认为主要由大型测序中心主导的领域做出贡献的创新方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/3626504/097f43d855b8/2047-217X-1-13-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/3626504/0e03206ecaed/2047-217X-1-13-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/3626504/097f43d855b8/2047-217X-1-13-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/3626504/0e03206ecaed/2047-217X-1-13-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bac9/3626504/097f43d855b8/2047-217X-1-13-2.jpg

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本文引用的文献

1
A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education.一个由当地资金支持的波多黎各鹦鹉(Amazona vittata)基因组测序项目增加了鸟类数据,并促进了年轻研究人员的教育。
Gigascience. 2012 Sep 28;1(1):14. doi: 10.1186/2047-217X-1-14.
2
An integrated encyclopedia of DNA elements in the human genome.人类基因组中 DNA 元件的综合百科全书。
Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.
3
Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Genes (Basel). 2019 Jan 16;10(1):54. doi: 10.3390/genes10010054.
4
A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education.一个由当地资金支持的波多黎各鹦鹉(Amazona vittata)基因组测序项目增加了鸟类数据,并促进了年轻研究人员的教育。
Gigascience. 2012 Sep 28;1(1):14. doi: 10.1186/2047-217X-1-14.
5
Correction: Genome empowerment for the Puerto Rican parrot - Amazona vittata.更正:波多黎各鹦鹉(Amazona vittata)的基因组赋能
Gigascience. 2012 Nov 27;1(1):17. doi: 10.1186/2047-217X-1-17.
单分子测序reads 的混合纠错与从头组装。
Nat Biotechnol. 2012 Jul 1;30(7):693-700. doi: 10.1038/nbt.2280.
4
Creating a buzz about insect genomes.引发对昆虫基因组的热议。
Science. 2011 Mar 18;331(6023):1386. doi: 10.1126/science.331.6023.1386.
5
Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species.基因组 10K:获取 10000 种脊椎动物全基因组序列的提案。
J Hered. 2009 Nov-Dec;100(6):659-74. doi: 10.1093/jhered/esp086. Epub 2009 Nov 5.