CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic.
Phys Chem Chem Phys. 2013 May 28;15(20):7740-54. doi: 10.1039/c3cp44440f. Epub 2013 Apr 19.
A methodology for optimizing the geometry and calculating the NMR shielding constants is calibrated for octahedral complexes of Pt(IV) and Ir(III) with modified nucleic acid bases. The performance of seven different functionals (BLYP, B3LYP, BHLYP, BP86, TPSS, PBE, and PBE0) in optimizing the geometry of transition-metal complexes is evaluated using supramolecular clusters derived from X-ray data. The effects of the size of the basis set (ranging from SVP to QZVPP) and the dispersion correction (D3) on the interatomic distances are analyzed. When structural deviations and computational demands are employed as criteria for evaluating the optimizations of these clusters, the PBE0/def2-TZVPP/D3 approach provides excellent results. In the next step, the PBE0/def2-TZVPP approach is used with the continuum-like screening model (COSMO) to optimize the geometry of single molecules for the subsequent calculation of the NMR shielding constants in solution. The two-component zeroth-order regular approximation (SO-ZORA) is used to calculate the NMR shielding constants (PBE0/TZP/COSMO). The amount of exact exchange in the PBE0 functional is validated for the nuclear magnetic shieldings of atoms in the vicinity of heavy transition metals. For the PBE0/TZP/COSMO setup, an exact exchange of 40% is found to accurately reproduce the experimental NMR shielding constants for both types of complexes. Finally, the effect of the amount of exact exchange on the NMR shielding calculations (which is capable of compensating for the structural deficiencies) is analyzed for various molecular geometries (SCS-MP2, BHLYP, and PBE0) and the influence of a trans-substituent on the NMR chemical shift of nitrogen is discussed. The observed dependencies for an iridium complex cannot be rationalized by visualizing the Fermi-contact (FC) induced spin density and probably originate from changes in the d-d transitions that modulate the spin-orbit (SO) part of the SO/FC term.
一种优化几何形状和计算 NMR 屏蔽常数的方法已针对具有修饰碱基的铂(IV)和铱(III)的八面体配合物进行了校准。使用来自 X 射线数据的超分子簇评估了七种不同函数(BLYP、B3LYP、BHLYP、BP86、TPSS、PBE 和 PBE0)在优化过渡金属配合物几何形状方面的性能。分析了基组大小(从 SVP 到 QZVPP)和色散校正(D3)对原子间距离的影响。当结构偏差和计算需求用作评估这些簇优化的标准时,PBE0/def2-TZVPP/D3 方法提供了出色的结果。在下一步中,使用 PBE0/def2-TZVPP 方法和连续相似屏蔽模型(COSMO)来优化单个分子的几何形状,以便随后在溶液中计算 NMR 屏蔽常数。使用双组分零阶正则逼近(SO-ZORA)来计算 NMR 屏蔽常数(PBE0/TZP/COSMO)。对于邻近重过渡金属原子的核磁屏蔽,验证了 PBE0 函数中精确交换的量。对于这两种类型的配合物,发现 PBE0/TZP/COSMO 设定中的精确交换 40%可以准确重现实验 NMR 屏蔽常数。最后,分析了对于各种分子几何形状(SCS-MP2、BHLYP 和 PBE0)和反式取代基对氮的 NMR 化学位移的影响,精确交换量对 NMR 屏蔽计算的影响(能够补偿结构缺陷)。对于铱配合物观察到的依赖性不能通过可视化费米接触(FC)诱导的自旋密度来合理化,并且可能源于调节 SO/FC 项的自旋轨道(SO)部分的 d-d 跃迁的变化。