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基于 ISSR 变异和质体间隔序列的夏威夷 Clermontia(桔梗科)系统发育、花进化和岛屿间扩散。

Phylogeny, floral evolution, and inter-island dispersal in Hawaiian Clermontia (Campanulaceae) based on ISSR variation and plastid spacer sequences.

机构信息

Department of Botany, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

出版信息

PLoS One. 2013 May 2;8(5):e62566. doi: 10.1371/journal.pone.0062566. Print 2013.

Abstract

Previous studies based on DNA restriction-site and sequence variation have shown that the Hawaiian lobeliads are monophyletic and that the two largest genera, Cyanea and Clermontia, diverged from each other ca. 9.7 Mya. Sequence divergence among species of Clermontia is quite limited, however, and extensive hybridization is suspected, which has interfered with production of a well-resolved molecular phylogeny for the genus. Clermontia is of considerable interest because several species posses petal-like sepals, raising the question of whether such a homeotic mutation has arisen once or several times. In addition, morphological and molecular studies have implied different patterns of inter-island dispersal within the genus. Here we use nuclear ISSRs (inter-simple sequence repeat polymorphisms) and five plastid non-coding sequences to derive biparental and maternal phylogenies for Clermontia. Our findings imply that (1) Clermontia is not monophyletic, with Cl. pyrularia nested within Cyanea and apparently an intergeneric hybrid; (2) the earliest divergent clades within Clermontia are native to Kauài, then Òahu, then Maui, supporting the progression rule of dispersal down the chain toward progressively younger islands, although that rule is violated in later-evolving taxa in the ISSR tree; (3) almost no sequence divergence among several Clermontia species in 4.5 kb of rapidly evolving plastid DNA; (4) several apparent cases of hybridization/introgression or incomplete lineage sorting (i.e., Cl. oblongifolia, peleana, persicifolia, pyrularia, samuelii, tuberculata), based on extensive conflict between the ISSR and plastid phylogenies; and (5) two origins and two losses of petaloid sepals, or--perhaps more plausibly--a single origin and two losses of this homeotic mutation, with its introgression into Cl. persicifolia. Our phylogenies are better resolved and geographically more informative than others based on ITS and 5S-NTS sequences and nuclear SNPs, but agree with them in supporting Clermontia's origin on Kauài or some older island and dispersal down the chain subsequently.

摘要

先前基于 DNA 限制酶切位点和序列变异的研究表明,夏威夷半边莲是单系的,其中两个最大的属,Cyanea 和 Clermontia,大约在 970 万年前就已经分化。然而,Clermontia 种间的序列分化相当有限,而且广泛的杂交现象被怀疑存在,这干扰了该属的分子系统发育树的构建。Clermontia 具有相当大的研究价值,因为有几个物种具有花瓣状的萼片,这就提出了这样的一个同异位突变是否只发生过一次或多次的问题。此外,形态学和分子研究表明,该属在各岛屿间的扩散模式存在差异。在这里,我们使用核 ISSR(简单重复间序列多态性)和五个质体非编码序列来构建 Clermontia 的双亲和母系系统发育。我们的研究结果表明:(1)Clermontia 不是单系的,Cl. pyrularia 嵌套在 Cyanea 中,显然是种间杂种;(2)Clermontia 最早分化的分支是原生在考艾岛,然后是欧胡岛,再是毛伊岛,这支持了扩散的“链条规则”,即从较老的岛屿向较年轻的岛屿扩散,尽管在 ISSR 树中,较晚进化的分类群违反了这一规则;(3)在 4.5kb 的快速进化质体 DNA 中,几个 Clermontia 物种之间几乎没有序列分化;(4)根据 ISSR 和质体系统发育之间的广泛冲突,有几个明显的杂交/基因渗入或不完全谱系分选的情况(即 Cl. oblongifolia、peleana、persicifolia、pyrularia、samuelii、tuberculata);(5)两个花瓣状萼片的起源和两个丢失,或者——也许更合理地说——单一起源和两个同异位突变的丢失,其基因渗入到 Cl. persicifolia 中。与基于 ITS 和 5S-NTS 序列和核 SNP 的研究相比,我们的系统发育在分辨率和地理信息方面更好,但与它们一致的是,都支持 Clermontia 的起源于考艾岛或更早的岛屿,然后沿着链条向下扩散。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe1f/3642221/e484f1bbeb82/pone.0062566.g001.jpg

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