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与糖尿病相关的肥胖症中功能蛋白的生物信息学分析

Bioinformatic analysis of functional proteins involved in obesity associated with diabetes.

作者信息

Rao Allam Appa, Tayaru N Manga, Thota Hanuman, Changalasetty Suresh Babu, Thota Lalitha Saroja, Gedela Srinubabu

机构信息

International Center for Bioinformatics, Department of Computer Science and Systems Engineering, Andhra University, India;

出版信息

Int J Biomed Sci. 2008 Mar;4(1):70-3.

PMID:23675069
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3614673/
Abstract

The twin epidemic of diabetes and obesity pose daunting challenges worldwide. The dramatic rise in obesity-associated diabetes resulted in an alarming increase in the incidence and prevalence of obesity an important complication of diabetes. Differences among individuals in their susceptibility to both these conditions probably reflect their genetic constitutions. The dramatic improvements in genomic and bioinformatic resources are accelerating the pace of gene discovery. It is tempting to speculate the key susceptible genes/proteins that bridges diabetes mellitus and obesity. In this regard, we evaluated the role of several genes/proteins that are believed to be involved in the evolution of obesity associated diabetes by employing multiple sequence alignment using ClustalW tool and constructed a phylogram tree using functional protein sequences extracted from NCBI. Phylogram was constructed using Neighbor-Joining Algorithm a bioinformatic tool. Our bioinformatic analysis reports resistin gene as ominous link with obesity associated diabetes. This bioinformatic study will be useful for future studies towards therapeutic inventions of obesity associated type 2 diabetes.

摘要

糖尿病和肥胖这两大流行病在全球范围内构成了严峻挑战。与肥胖相关的糖尿病急剧增加,导致肥胖症(糖尿病的一种重要并发症)的发病率和患病率惊人地上升。个体对这两种疾病易感性的差异可能反映了他们的基因构成。基因组和生物信息资源的显著改善正在加快基因发现的步伐。人们不禁猜测那些连接糖尿病和肥胖症的关键易感基因/蛋白质。在这方面,我们通过使用ClustalW工具进行多序列比对,评估了几个被认为与肥胖相关糖尿病发展有关的基因/蛋白质的作用,并使用从NCBI提取的功能蛋白序列构建了系统发育树。系统发育树是使用生物信息工具邻接法构建的。我们的生物信息分析报告显示抵抗素基因是与肥胖相关糖尿病的不祥关联。这项生物信息学研究将有助于未来针对肥胖相关2型糖尿病治疗发明的研究。

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本文引用的文献

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The obesity-associated FTO gene encodes a 2-oxoglutarate-dependent nucleic acid demethylase.与肥胖相关的FTO基因编码一种依赖于2-氧戊二酸的核酸去甲基化酶。
Science. 2007 Nov 30;318(5855):1469-72. doi: 10.1126/science.1151710. Epub 2007 Nov 8.
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Integration of DIGE and bioinformatics analyses reveals a role of the antiobesity agent tungstate in redox and energy homeostasis pathways in brown adipose tissue.差异凝胶电泳(DIGE)与生物信息学分析相结合,揭示了抗肥胖剂钨酸盐在棕色脂肪组织氧化还原和能量稳态途径中的作用。
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The insulin resistance syndrome: physiological considerations.
胰岛素抵抗综合征:生理学考量
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Analysis of mouse skin reveals proteins that are altered in a diet-induced diabetic state: a new method for detection of type 2 diabetes.对小鼠皮肤的分析揭示了在饮食诱导的糖尿病状态下发生改变的蛋白质:一种检测2型糖尿病的新方法。
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A strategy to search for common obesity and type 2 diabetes genes.一种寻找常见肥胖和2型糖尿病基因的策略。
Trends Endocrinol Metab. 2007 Jan-Feb;18(1):19-26. doi: 10.1016/j.tem.2006.11.003. Epub 2006 Nov 28.
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Circulating resistin in lean, obese, and insulin-resistant mouse models: lack of association with insulinemia and glycemia.瘦型、肥胖型和胰岛素抵抗型小鼠模型中的循环抵抗素:与胰岛素血症和血糖缺乏关联。
Am J Physiol Endocrinol Metab. 2005 Mar;288(3):E625-32. doi: 10.1152/ajpendo.00184.2004. Epub 2004 Nov 2.
7
Variation in the resistin gene is associated with obesity and insulin-related phenotypes in Finnish subjects.抵抗素基因的变异与芬兰人群的肥胖及胰岛素相关表型有关。
Diabetologia. 2004 Oct;47(10):1782-8. doi: 10.1007/s00125-004-1537-x. Epub 2004 Oct 27.
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Regulation of adipocytokines and insulin resistance.脂肪细胞因子与胰岛素抵抗的调节
Diabetologia. 2003 Dec;46(12):1594-603. doi: 10.1007/s00125-003-1228-z. Epub 2003 Nov 6.
9
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Diabetes Res Clin Pract. 2003 Sep;61(3):191-8. doi: 10.1016/s0168-8227(03)00119-0.
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