Margiolaki Irene, Giannopoulou Anastasia E, Wright Jonathan P, Knight Lisa, Norrman Mathias, Schluckebier Gerd, Fitch Andrew N, Von Dreele Robert B
Department of Biology, Section of Genetics, Cell Biology and Development, University of Patras, GR-26500 Patras, Greece.
Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):978-90. doi: 10.1107/S0907444913003867. Epub 2013 May 11.
A series of bovine insulin samples were obtained as 14 polycrystalline precipitates at room temperature in the pH range 5.0-7.6. High-resolution powder X-ray diffraction data were collected to reveal the T6 hexameric insulin form. Sample homogeneity and reproducibility were verified by additional synchrotron measurements using an area detector. Pawley analyses of the powder patterns displayed pH- and radiation-induced anisotropic lattice modifications. The pronounced anisotropic lattice variations observed for T6 insulin were exploited in a 14-data-set Rietveld refinement to obtain an average crystal structure over the pH range investigated. Only the protein atoms of the known structure with PDB code 2a3g were employed in our starting model. A novel approach for refining protein structures using powder diffraction data is presented. In this approach, each amino acid is represented by a flexible rigid body (FRB). The FRB model requires a significantly smaller number of refinable parameters and restraints than a fully free-atom refinement. A total of 1542 stereochemical restraints were imposed in order to refine the positions of 800 protein atoms, two Zn atoms and 44 water molecules in the asymmetric unit using experimental data in the resolution range 18.2-2.7 Å for all profiles.
一系列牛胰岛素样品在室温下于pH值5.0 - 7.6范围内以14种多晶沉淀形式获得。收集高分辨率粉末X射线衍射数据以揭示T6六聚体胰岛素形式。通过使用面积探测器的额外同步加速器测量验证了样品的均匀性和可重复性。对粉末图谱的Pawley分析显示了pH值和辐射诱导的各向异性晶格修饰。在14组数据集的Rietveld精修中利用观察到的T6胰岛素明显的各向异性晶格变化,以获得在所研究的pH范围内的平均晶体结构。在我们的起始模型中仅采用了具有PDB代码2a3g的已知结构的蛋白质原子。提出了一种使用粉末衍射数据精修蛋白质结构的新方法。在这种方法中,每个氨基酸由一个柔性刚体(FRB)表示。与完全自由原子精修相比,FRB模型所需的可精修参数和约束数量显著更少。为了使用分辨率范围为18.2 - 2.7 Å的所有图谱的实验数据精修不对称单元中800个蛋白质原子、两个锌原子和44个水分子的位置,总共施加了1542个立体化学约束。