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Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes.人类β细胞转录组分析揭示了长链非编码 RNA,这些 RNA 具有组织特异性、动态调节以及在 2 型糖尿病中异常表达的特征。
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Small RNA sequencing reveals microRNAs that modulate angiotensin II effects in vascular smooth muscle cells.小 RNA 测序揭示了调节血管平滑肌细胞中血管紧张素 II 作用的 microRNAs。
J Biol Chem. 2012 May 4;287(19):15672-83. doi: 10.1074/jbc.M111.322669. Epub 2012 Mar 19.
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Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.系统鉴定斑马鱼胚胎发生过程中表达的长非编码 RNA。
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新型长非编码 RNA 受血管平滑肌细胞中血管紧张素 II 的调控。

Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells.

机构信息

Department of Diabetes and Cancer Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.

出版信息

Circ Res. 2013 Jul 19;113(3):266-78. doi: 10.1161/CIRCRESAHA.112.300849. Epub 2013 May 22.

DOI:10.1161/CIRCRESAHA.112.300849
PMID:23697773
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3763837/
Abstract

RATIONALE

Misregulation of angiotensin II (Ang II) actions can lead to atherosclerosis and hypertension. Evaluating transcriptomic responses to Ang II in vascular smooth muscle cells (VSMCs) is important to understand the gene networks regulated by Ang II, which might uncover previously unidentified mechanisms and new therapeutic targets.

OBJECTIVE

To identify all transcripts, including novel protein-coding and long noncoding RNAs, differentially expressed in response to Ang II in rat VSMCs using transcriptome and epigenome profiling.

METHODS AND RESULTS

De novo assembly of transcripts from RNA-sequencing revealed novel protein-coding and long noncoding RNAs (lncRNAs). The majority of the genomic loci of these novel transcripts are enriched for histone H3 lysine-4-trimethylation and histone H3 lysine-36-trimethylation, 2 chromatin modifications found at actively transcribed regions, providing further evidence that these are bonafide transcripts. Analysis of transcript abundance identified all protein-coding and lncRNAs regulated by Ang II. We further discovered that an Ang II-regulated lncRNA functions as the host transcript for miR-221 and miR-222, 2 microRNAs implicated in cell proliferation. Additionally, small interfering RNA-mediated knockdown of Lnc-Ang362 reduced proliferation of VSMCs.

CONCLUSIONS

These data provide novel insights into the epigenomic and transcriptomic effects of Ang II in VSMCs. They provide the first identification of Ang II-regulated lncRNAs, which suggests functional roles for these lncRNAs in mediating cellular responses to Ang II. Furthermore, we identify an Ang II-regulated lncRNA that is responsible for the production of 2 microRNAs implicated in VSMC proliferation. These newly identified noncoding transcripts could be exploited as novel therapeutic targets for Ang II-associated cardiovascular diseases.

摘要

背景

血管紧张素 II(Ang II)作用的失调可导致动脉粥样硬化和高血压。评估血管平滑肌细胞(VSMCs)中 Ang II 的转录组反应对于理解受 Ang II 调节的基因网络非常重要,这可能揭示以前未被识别的机制和新的治疗靶点。

目的

使用转录组和表观基因组谱分析,鉴定 Ang II 作用于大鼠 VSMCs 时差异表达的所有转录本,包括新的编码蛋白和长非编码 RNA。

方法和结果

从 RNA-seq 重新组装转录本揭示了新的编码蛋白和长非编码 RNA(lncRNA)。这些新转录本的大多数基因组座富含组蛋白 H3 赖氨酸-4-三甲基化和组蛋白 H3 赖氨酸-36-三甲基化,这两种染色质修饰存在于活跃转录区域,进一步证明这些是真实的转录本。转录本丰度分析鉴定了所有受 Ang II 调节的编码蛋白和 lncRNA。我们进一步发现,Ang II 调节的 lncRNA 作为 miR-221 和 miR-222 的宿主转录本,这两种 microRNA 与细胞增殖有关。此外,用小干扰 RNA 敲低 Lnc-Ang362 可减少 VSMCs 的增殖。

结论

这些数据为 Ang II 在 VSMCs 中的表观基因组和转录组效应提供了新的见解。它们首次鉴定了 Ang II 调节的 lncRNA,这表明这些 lncRNA 在介导细胞对 Ang II 的反应中具有功能作用。此外,我们鉴定了一种 Ang II 调节的 lncRNA,它负责产生 2 种与 VSMC 增殖有关的 microRNA。这些新发现的非编码转录本可能被用作与 Ang II 相关的心血管疾病的新治疗靶点。