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8q 染色体上的 4 基因标志物 panel 在亚洲胃癌患者中的应用。

A 4-gene panel as a marker at chromosome 8q in Asian gastric cancer patients.

机构信息

State Key Laboratory of Medical Genomics, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China; Shanghai Institute of Hematology, Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China; Shanghai-MOST Key Laboratory of Health and Disease Genomics, National Engineering Center for Biochip at Shanghai, Shanghai, China.

出版信息

Genomics. 2013 Oct;102(4):323-30. doi: 10.1016/j.ygeno.2013.05.004. Epub 2013 May 28.

Abstract

A widely held viewpoint is that the use of multiple markers, combined in some type of algorithm, will be necessary to provide high enough discrimination between diseased cases and non-diseased. We applied stepwise logistic regression analysis to identify the best combination of the 32 biomarkers at chromosome 8q on an independent public microarray test set of 80 paired gastric samples. A combination of SULF1, INTS8, ATP6V1C1, and GPR172A was identified with a prediction accuracy of 98.0% for discriminating carcinomas from adjacent noncancerous tissues in our previous 25 paired samples. Interestingly, the overexpression of SULF1 was associated with tumor invasion and metastasis. Function prediction analysis revealed that the 4-marker panel was mainly associated with acidification of intracellular compartments. Taken together, we found a 4-gene panel that accurately discriminated gastric carcinomas from adjacent noncancerous tissues and these results had potential clinical significance in the early diagnosis and targeted treatment of gastric cancer.

摘要

一种普遍的观点认为,使用多种标志物,并以某种算法组合,将是区分患病病例和非患病病例所必需的。我们应用逐步逻辑回归分析,在一个独立的 80 对胃样本公共微阵列测试集中,确定 8q 染色体上 32 个生物标志物的最佳组合。我们之前在 25 对配对样本中发现,SULF1、INTS8、ATP6V1C1 和 GPR172A 的组合具有 98.0%的预测准确性,可区分癌与相邻非癌组织。有趣的是,SULF1 的过表达与肿瘤侵袭和转移有关。功能预测分析表明,4 个标志物的组合主要与细胞内区室酸化有关。总之,我们发现了一个 4 基因的标志物组合,可以准确地区分胃癌和相邻的非癌组织,这些结果在胃癌的早期诊断和靶向治疗方面具有潜在的临床意义。

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