Kranthi T, Rao S B, Manimaran P
C R Rao Advanced Institute of Mathematics, Statistics and Computer Science, University of Hyderabad Campus, GachiBowli, Hyderabad - 500046, India.
Mol Biosyst. 2013 Aug;9(8):2163-7. doi: 10.1039/c3mb25589a. Epub 2013 Jun 3.
The immense availability of protein interaction data, provided with an abstract network approach is valuable for the improved interpretation of biological processes and protein functions globally. The connectivity of a protein and its structure are related to its functional properties. Highly connected proteins are often functionally cardinal and the knockout of such proteins leads to lethality. In this paper, we propose a new approach based on graph information centrality measures to identify the synthetic lethal pairs in biological systems. To illustrate the efficacy of our approach, we have applied it to a human cancer protein interaction network. It is found that the lethal pairs obtained were analogous to the experimental and computational inferences, implying that our approach can serve as a surrogate for predicting the synthetic lethality.
通过抽象网络方法提供的海量蛋白质相互作用数据,对于全面改进对生物过程和蛋白质功能的解释具有重要价值。蛋白质的连接性及其结构与其功能特性相关。高度连接的蛋白质通常在功能上至关重要,敲除此类蛋白质会导致致死性。在本文中,我们提出了一种基于图信息中心性度量的新方法,用于识别生物系统中的合成致死对。为了说明我们方法的有效性,我们将其应用于人类癌症蛋白质相互作用网络。结果发现,获得的致死对与实验和计算推断相似,这意味着我们的方法可作为预测合成致死性的替代方法。