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使用 DFT 和量子化学计算研究 oncocalyxone A 的分子结构、振动、电子和 NMR 谱。

Study of molecular structure, vibrational, electronic and NMR spectra of oncocalyxone A using DFT and quantum chemical calculations.

机构信息

Department of Physics, University of Lucknow, Lucknow 226 007, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2013 Sep;113:367-77. doi: 10.1016/j.saa.2013.05.018. Epub 2013 May 20.

Abstract

Oncocalyxone A (C17H18O5) is the major secondary metabolite isolated from ethanol extract from the heartwood of Auxemma oncocalyx Taub popularly known as "pau branco". Oncocalyxone A (Onco A) has many pharmaceutical uses such as: antitumor, analgesic, antioxidant and causative of inhibition of platelet activation. We have performed the optimized geometry, total energy, conformational study, molecular electrostatic potential mapping, frontier orbital energy gap and vibrational frequencies of Onco A employing ab initio Hartree-Fock (HF) and density functional theory (DFT/B3LYP) method with 6-311++G(d,p) basis set. Stability of the molecule arising from hyperconjugative interactions and/or charge delocalization has been analyzed using natural bond orbital (NBO) analysis. UV-vis spectrum of the compound was recorded in DMSO and MeOH solvent. The TD-DFT calculations have been performed to explore the influence of electronic absorption spectra in the gas phase, as well as in solution environment using IEF-PCM and 6-31G basis set. The (13)C NMR chemical shifts have been calculated with the B3LYP/6-311++G(d,p) basis set and compared with the experimental values. These methods have been used as tools for structural characterization of Onco A.

摘要

从 Auxemma oncocalyx Taub 的心材乙醇提取物中分离得到的主要次生代谢产物 Oncocalyxone A (C17H18O5),俗称“pau branco”。Oncocalyxone A (Onco A) 具有许多药物用途,如:抗肿瘤、镇痛、抗氧化和抑制血小板活化。我们采用从头算 Hartree-Fock (HF) 和密度泛函理论 (DFT/B3LYP) 方法,在 6-311++G(d,p) 基组上,对 Onco A 的优化几何形状、总能量、构象研究、分子静电势映射、前沿轨道能隙和振动频率进行了研究。利用自然键轨道 (NBO) 分析,分析了分子由于超共轭相互作用和/或电荷离域而产生的稳定性。在 DMSO 和 MeOH 溶剂中记录了化合物的紫外-可见光谱。采用 TD-DFT 计算方法,研究了电子吸收光谱在气相以及在 IEF-PCM 和 6-31G 基组的溶液环境中的影响。采用 B3LYP/6-311++G(d,p) 基组计算了 (13)C NMR 化学位移,并与实验值进行了比较。这些方法已被用作 Onco A 结构特征的工具。

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