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在病理学中实施基因组医学。

Implementing genomic medicine in pathology.

机构信息

Department of Human Genetics, Emory University School of Medicine, Atlanta, GA 30322, USA.

出版信息

Adv Anat Pathol. 2013 Jul;20(4):238-44. doi: 10.1097/PAP.0b013e3182977199.

DOI:10.1097/PAP.0b013e3182977199
PMID:23752086
Abstract

The finished sequence of the Human Genome Project, published 50 years after Watson and Crick's seminal paper on the structure of DNA, pushed human genetics into the public eye and ushered in the genomic era. A significant, if overlooked, aspect of the race to complete the genome was the technology that propelled scientists to the finish line. DNA sequencing technologies have become more standardized, automated, and capable of higher throughput. This technology has continued to grow at an astounding rate in the decade since the Human Genome Project was completed. Today, massively parallel sequencing, or next-generation sequencing (NGS), allows the detection of genetic variants across the entire genome. This ability has led to the identification of new causes of disease and is changing the way we categorize, treat, and manage disease. NGS approaches such as whole-exome sequencing and whole-genome sequencing are rapidly becoming an affordable genetic testing strategy for the clinical laboratory. One test can now provide vast amounts of health information pertaining not only to the disease of interest, but information that may also predict adult-onset disease, reveal carrier status for a rare disease and predict drug responsiveness. The issue of what to do with these incidental findings, along with questions pertaining to NGS testing strategies, data interpretation and storage, and applying genetic testing results into patient care, remains without a clear answer. This review will explore these issues and others relevant to the implementation of NGS in the clinical laboratory.

摘要

人类基因组计划的完成序列发表于沃森和克里克发表关于 DNA 结构的开创性论文 50 年后,将人类遗传学推向了公众的视野,并开创了基因组时代。在完成基因组的竞赛中,一个重要的、但被忽视的方面是推动科学家冲向终点的技术。DNA 测序技术变得更加标准化、自动化,并且能够实现更高的通量。自人类基因组计划完成以来的十年里,这项技术以惊人的速度持续发展。如今,大规模并行测序或下一代测序 (NGS) 可以检测整个基因组中的遗传变异。这种能力导致了新疾病病因的发现,并正在改变我们对疾病进行分类、治疗和管理的方式。全外显子组测序和全基因组测序等 NGS 方法正在迅速成为临床实验室负担得起的基因检测策略。现在,一次测试就可以提供大量与疾病相关的健康信息,不仅包括感兴趣的疾病,还包括可能预测成人发病的信息、罕见疾病的携带者状态,并预测药物反应性。这些偶然发现该如何处理,以及与 NGS 测试策略、数据解释和存储以及将基因测试结果应用于患者护理相关的问题,仍然没有明确的答案。这篇综述将探讨这些问题以及与在临床实验室中实施 NGS 相关的其他问题。

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Implementing genomic medicine in pathology.在病理学中实施基因组医学。
Adv Anat Pathol. 2013 Jul;20(4):238-44. doi: 10.1097/PAP.0b013e3182977199.
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