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[猪巨细胞病毒转座子在牛基因组中的整合位点及其特征分析]

[Integration sites and their characteristic analysis of piggyBac transposon in cattle genome].

作者信息

Du Xin-Hua, Gao Xue, Zhang Lu-Pei, Gao Hui-Jiang, Li Jun-Ya, Xu Shang-Zhong

机构信息

Key Laboratory for Farm Animal Genetic Resources and Utilization of Ministry of Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100193, China.

出版信息

Yi Chuan. 2013 Jun;35(6):771-7. doi: 10.3724/sp.j.1005.2013.00771.

DOI:10.3724/sp.j.1005.2013.00771
PMID:23774022
Abstract

As a useful tool for genetic engineering, piggyBac (PB) transposons have been widely used in more than one species of transgenosis or generating mutation studies. At present, the studies about PB transposons in cattle were few. In order to get the PB transposon integration sites and summarize its characteristics in bovine genome, donor plasmid of PB[CMV-EGFP] and helper-dependent plasmid of pcDNA-PBase were constructed and transferred into bovine fibroblasts by Amaxa basic nucleofector kit for primary mammalian fibroblasts. Cell clones stably transfected were obtained after screening by G-418. Genomic DNA of transgenic cells was extracted and the integration sites of PB transposon were detected by genome walking technology. Eight integration sites were obtained in bovine genome, although only 5 sites were mapped on chromosomes 1, 2, 11, and X chromosome. We found that PB transposon was inserted into the "TTAA" location and integrated into the intergenic non-regulatory sites between two genes. Analysis of the composition of the five bases, which was close to the side of the PB integration sites "TTAA", showed that PB 5' tended to be inserted into region rich in GC (62.5%). From the study, we got that transposition occurred in cattle genome by PB transposons and the integration site information acquired from the research will provide theoretical references for bovine study by PB transposon.

摘要

作为基因工程的一种有用工具,piggyBac(PB)转座子已广泛应用于多种转基因或产生突变的研究中。目前,关于PB转座子在牛中的研究较少。为了获得PB转座子在牛基因组中的整合位点并总结其特征,构建了PB[CMV-EGFP]供体质粒和pcDNA-PBase辅助依赖性质粒,并通过用于原代哺乳动物成纤维细胞的Amaxa基本核转染试剂盒将其转入牛成纤维细胞。经G-418筛选后获得稳定转染的细胞克隆。提取转基因细胞的基因组DNA,通过基因组步移技术检测PB转座子的整合位点。在牛基因组中获得了8个整合位点,尽管只有5个位点定位在1号、2号、11号染色体和X染色体上。我们发现PB转座子插入到“TTAA”位点,并整合到两个基因之间的基因间非调控位点。对靠近PB整合位点“TTAA”一侧的五个碱基组成进行分析,结果表明PB 5'端倾向于插入富含GC的区域(62.5%)。通过本研究,我们发现PB转座子在牛基因组中发生了转座,从该研究中获得的整合位点信息将为利用PB转座子进行牛的研究提供理论参考。

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