• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

水合蛋白质中 T(g)时笼动态的变化:校正甲基旋转贡献后的均方位移趋势。

Change of caged dynamics at T(g) in hydrated proteins: trend of mean squared displacements after correcting for the methyl-group rotation contribution.

机构信息

Dipartimento di Fisica, Università di Pisa, Largo Bruno Pontecorvo 3, I-56127, Pisa, Italy.

出版信息

J Chem Phys. 2013 Jun 21;138(23):235102. doi: 10.1063/1.4810752.

DOI:10.1063/1.4810752
PMID:23802985
Abstract

The question whether the dynamics of hydrated proteins changes with temperature on crossing the glass transition temperature like that found in conventional glassformers is an interesting one. Recently, we have shown that a change of temperature dependence of the mean square displacement (MSD) at Tg is present in proteins solvated with bioprotectants, such as sugars or glycerol with or without the addition of water, coexisting with the dynamic transition at a higher temperature Td. The dynamical change at Tg is similar to that in conventional glassformers at sufficiently short times and low enough temperatures, where molecules are mutually caged by the intermolecular potential. This is a general and fundamental property of glassformers which is always observed at or near Tg independent of the energy resolution of the spectrometer, and is also the basis of the dynamical change of solvated proteins at Tg. When proteins are solvated with bioprotectants they show higher Tg and Td than the proteins hydrated by water alone, due to the stabilizing action of excipients, thus the observation of the change of T-dependence of the MSD at Tg is unobstructed by the methyl-group rotation contribution at lower temperatures [S. Capaccioli, K. L. Ngai, S. Ancherbak, and A. Paciaroni, J. Phys. Chem. B 116, 1745 (2012)]. On the other hand, in the case of proteins hydrated by water alone unambiguous evidence of the break at Tg is hard to find, because of their lower Tg and Td. Notwithstanding, in this paper, we provide evidence for the change at Tg of the T-dependence of proteins hydrated by pure water. This evidence turns out from (i) neutron scattering experimental investigations where the sample has been manipulated by either full or partial deuteration to suppress the methyl-group rotation contribution, and (ii) neutron scattering experimental investigations where the energy resolution is such that only motions with characteristic times shorter than 15 ps can be sensed, thus shifting the onset of both the methyl-group rotation and the dynamic transition contribution to higher temperatures. We propose that, in general, coexistence of the break of the elastic intensity or the MSD at Tg with the dynamic transition at Td in hydrated and solvated proteins. Recognition of this fact helps to remove inconsistency and conundrum encountered in interpreting data of hydrated proteins that thwart progress in understanding the origin of the dynamic transition.

摘要

水合蛋白质的动力学是否会像传统玻璃形成体那样随着温度跨越玻璃化转变温度而发生变化,这是一个有趣的问题。最近,我们已经表明,在含有生物保护剂(例如糖或甘油)的蛋白质中,即使在没有添加水的情况下,随着温度的升高,均方位移(MSD)的温度依赖性也会发生变化,这与更高温度 Td 下的动态转变并存。在足够短的时间和足够低的温度下,Tg 处的动力学变化与传统玻璃形成体相似,在这些条件下,分子被分子间势能相互困住。这是玻璃形成体的一个普遍而基本的性质,无论光谱仪的能量分辨率如何,都会在 Tg 或其附近观察到,也是 Tg 下水合蛋白质动力学变化的基础。当蛋白质被生物保护剂水合时,由于赋形剂的稳定作用,它们的 Tg 和 Td 会高于单独用水水合的蛋白质,因此在较低温度下,通过甲基旋转贡献来观察 MSD 对 T 的依赖性的变化不会受阻 [S. Capaccioli、K. L. Ngai、S. Ancherbak 和 A. Paciaroni,J. Phys. Chem. B 116,1745(2012)]。另一方面,在单独用水水合的蛋白质的情况下,由于 Tg 和 Td 较低,很难找到 Tg 处的明显证据。尽管如此,在本文中,我们提供了水合蛋白质 Tg 处 T 依赖性变化的证据。这些证据来自(i)中子散射实验研究,其中通过完全或部分氘化来操纵样品以抑制甲基旋转贡献,以及(ii)中子散射实验研究,其中能量分辨率使得只能感知到特征时间短于 15 ps 的运动,从而将甲基旋转和动态转变贡献的开始都推向更高的温度。我们提出,一般来说,在水合和溶剂化蛋白质中,Tg 处弹性强度或 MSD 的断裂与 Td 处的动态转变共存。认识到这一事实有助于消除在解释水合蛋白质数据时遇到的不一致和难题,这些难题阻碍了对动态转变起源的理解。

相似文献

1
Change of caged dynamics at T(g) in hydrated proteins: trend of mean squared displacements after correcting for the methyl-group rotation contribution.水合蛋白质中 T(g)时笼动态的变化:校正甲基旋转贡献后的均方位移趋势。
J Chem Phys. 2013 Jun 21;138(23):235102. doi: 10.1063/1.4810752.
2
Evidence of coexistence of change of caged dynamics at T(g) and the dynamic transition at T(d) in solvated proteins.溶剂化蛋白质中 T(g)处笼态动力学变化和 T(d)处动力学转变的共存证据。
J Phys Chem B. 2012 Feb 16;116(6):1745-57. doi: 10.1021/jp2057892. Epub 2012 Feb 3.
3
The protein "glass" transition and the role of the solvent.蛋白质的“玻璃态”转变及溶剂的作用。
J Phys Chem B. 2008 Mar 27;112(12):3826-32. doi: 10.1021/jp710462e. Epub 2008 Mar 5.
4
Dynamics of hydrated proteins and bio-protectants: Caged dynamics, β-relaxation, and α-relaxation.水合蛋白质和生物保护剂的动力学:笼动态、β松弛和α松弛。
Biochim Biophys Acta Gen Subj. 2017 Jan;1861(1 Pt B):3553-3563. doi: 10.1016/j.bbagen.2016.04.027. Epub 2016 May 4.
5
Methyl group dynamics as a probe of the protein dynamical transition.作为蛋白质动力学转变探针的甲基动力学
J Am Chem Soc. 2004 Dec 15;126(49):15928-9. doi: 10.1021/ja0480623.
6
Scaling analysis of bio-molecular dynamics derived from elastic incoherent neutron scattering experiments.从弹性非弹性中子散射实验中得出的生物分子动力学的标度分析。
J Chem Phys. 2013 Jul 28;139(4):045105. doi: 10.1063/1.4816513.
7
The JG β-relaxation in water and impact on the dynamics of aqueous mixtures and hydrated biomolecules.水中的 JGβ松弛及其对水混合体系和水合生物分子动力学的影响。
J Chem Phys. 2019 Jul 21;151(3):034504. doi: 10.1063/1.5100835.
8
Conditioning action of the environment on the protein dynamics studied through elastic neutron scattering.环境对通过弹性中子散射研究的蛋白质动力学的调节作用。
Eur Biophys J. 2006 Sep;35(7):591-9. doi: 10.1007/s00249-006-0073-7. Epub 2006 Jun 8.
9
An alternative explanation of the change in T-dependence of the effective Debye-Waller factor at T(c) or T(B).在Tc或TB时有效德拜-瓦勒因子的T依赖性变化的另一种解释。
J Chem Phys. 2014 Sep 21;141(11):114502. doi: 10.1063/1.4895554.
10
The inverse relationship between protein dynamics and thermal stability.蛋白质动力学与热稳定性之间的反比关系。
Biophys J. 2001 Oct;81(4):2339-43. doi: 10.1016/S0006-3495(01)75880-8.

引用本文的文献

1
Decoupling of the onset of anharmonicity between a protein and its surface water around 200 K.在 200K 左右,蛋白质与其表面水之间非谐性的起始去耦。
Elife. 2024 Aug 19;13:RP95665. doi: 10.7554/eLife.95665.
2
Polymorphism and Ligand Binding Modulate Fast Dynamics of Human Telomeric G-Quadruplexes.多态性和配体结合调节人端粒 G-四链体的快速动力学。
Int J Mol Sci. 2023 Feb 21;24(5):4280. doi: 10.3390/ijms24054280.
3
The Dynamics of Hydrated Proteins Are the Same as Those of Highly Asymmetric Mixtures of Two Glass-Formers.水合蛋白质的动力学与两种玻璃形成剂的高度不对称混合物相同。
ACS Omega. 2020 Dec 23;6(1):340-347. doi: 10.1021/acsomega.0c04655. eCollection 2021 Jan 12.
4
Translational diffusion of hydration water correlates with functional motions in folded and intrinsically disordered proteins.水合作用的平动扩散与折叠和无规卷曲蛋白质的功能运动相关。
Nat Commun. 2015 Mar 16;6:6490. doi: 10.1038/ncomms7490.
5
The role of water in protein's behavior: The two dynamical crossovers studied by NMR and FTIR techniques.水在蛋白质行为中的作用:通过核磁共振和傅里叶变换红外光谱技术研究的两个动力学转变。
Comput Struct Biotechnol J. 2014 Nov 15;13:33-7. doi: 10.1016/j.csbj.2014.11.007. eCollection 2015.