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拥挤脂质膜中蛋白质和脂质的异常和正常扩散。

Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes.

机构信息

Department of Physics, Tampere University of Technology, P.O. Box 692, FI-33101 Tampere, Finland.

出版信息

Faraday Discuss. 2013;161:397-417; discussion 419-59. doi: 10.1039/c2fd20085f.

Abstract

Lateral diffusion plays a crucial role in numerous processes that take place in cell membranes, yet it is quite poorly understood in native membranes characterized by, e.g., domain formation and large concentration of proteins. In this article, we use atomistic and coarse-grained simulations to consider how packing of membranes and crowding with proteins affect the lateral dynamics of lipids and membrane proteins. We find that both packing and protein crowding have a profound effect on lateral diffusion, slowing it down. Anomalous diffusion is observed to be an inherent property in both protein-free and protein-rich membranes, and the time scales of anomalous diffusion and the exponent associated with anomalous diffusion are found to strongly depend on packing and crowding. Crowding with proteins also has a striking effect on the decay rate of dynamical correlations associated with lateral single-particle motion, as the transition from anomalous to normal diffusion is found to take place at macroscopic time scales: while in protein-poor conditions normal diffusion is typically observed in hundreds of nanoseconds, in protein-rich conditions the onset of normal diffusion is tens of microseconds, and in the most crowded systems as large as milliseconds. The computational challenge which results from these time scales is not easy to deal with, not even in coarse-grained simulations. We also briefly discuss the physical limits of protein motion. Our results suggest that protein concentration is anything but constant in the plane of cell membranes. Instead, it is strongly dependent on proteins' preference for aggregation.

摘要

侧向扩散在细胞膜中发生的许多过程中起着至关重要的作用,但在具有域形成和大量蛋白质浓度等特征的天然膜中,其了解程度还相当有限。在本文中,我们使用原子和粗粒模拟来考虑膜的包装和蛋白质拥挤如何影响脂质和膜蛋白的侧向动力学。我们发现,包装和蛋白质拥挤都对侧向扩散有深远的影响,使其减缓。在无蛋白质和富含蛋白质的膜中都观察到异常扩散是固有性质,并且与异常扩散相关的异常扩散时间尺度和指数强烈依赖于包装和拥挤。蛋白质拥挤对与侧向单粒子运动相关的动力学相关性的衰减率也有显著影响,因为发现从异常扩散到正常扩散的转变发生在宏观时间尺度上:在蛋白质贫乏的条件下,正常扩散通常在数百纳秒内观察到,在富含蛋白质的条件下,正常扩散的起始时间为数十微秒,在最拥挤的系统中甚至高达毫秒。这些时间尺度带来的计算挑战并不容易处理,即使在粗粒模拟中也是如此。我们还简要讨论了蛋白质运动的物理限制。我们的结果表明,蛋白质浓度在细胞膜平面上绝不是恒定的。相反,它强烈依赖于蛋白质的聚集偏好。

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