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[大肠杆菌细胞中同源重组的酶促控制与超重组]

[Enzymatic control of homologous recombination in Escherichia coli cells and hyper-recombination].

作者信息

Bakhlanova I V, Dudkina A V, Baĭtin D M

出版信息

Mol Biol (Mosk). 2013 Mar-Apr;47(2):205-17. doi: 10.7868/s0026898413020031.

DOI:10.7868/s0026898413020031
PMID:23808153
Abstract

The RecA protein is a major enzyme of homologous recombination in bacterial cell. Forming a right-handed helical filament on ssDNA, it provides a homology search between two DNA molecules and homologous strand exchange. The RecA protein not only defends the cell from exposure to ionizing radiation and UV-irradiation, but also ensures the recombination process in the course of normal cell growth. A number of wild-type or mutant RecA proteins demonstrate increased recombinogenic properties in vitro and in vivo as compared with the wild-type RecA protein from Escherichia coli, which leads to hyper-recombination. The hyper-rec activity of RecA proteins during the recombination process in many depends on the filamentation dynamics on ssDNA and DNA-transferase properties. Changes in filamentation and DNA-transferase abilities of RecA protein may be the result of not only specific amino-acid substitutions, but also the functioning of the cell enzymatic apparatus, including such proteins as RecO, RecR, RecF, RecX, DinI, SSB, PsiB. To date, the function of each of these proteins is identified at the molecular level. However, the role of some of them in the cell metabolism remains to be seen. Increase in recombination in vivo is not always useful for a cell and faces various limitations. Moreover, in the bacterial cell some mechanisms are activated, that cause genomic reorganization, directed to suppress the expression of hyper-active RecA protein. The ways of hyper-active RecA protein regulation are very interesting, and they are studied in different model systems.

摘要

RecA蛋白是细菌细胞中同源重组的主要酶。它在单链DNA上形成右手螺旋丝,介导两个DNA分子之间的同源性搜索和同源链交换。RecA蛋白不仅能保护细胞免受电离辐射和紫外线照射,还能确保细胞在正常生长过程中的重组过程。与来自大肠杆菌的野生型RecA蛋白相比,许多野生型或突变型RecA蛋白在体外和体内均表现出增强的重组特性,这导致了超重组。在许多情况下,RecA蛋白在重组过程中的超重组活性取决于其在单链DNA上的丝化动力学和DNA转移酶特性。RecA蛋白丝化和DNA转移酶能力的变化可能不仅是特定氨基酸取代的结果,还可能是细胞酶装置功能的结果,包括RecO、RecR、RecF、RecX、DinI、SSB、PsiB等蛋白质。迄今为止,这些蛋白质各自的功能已在分子水平上得到确定。然而,其中一些蛋白质在细胞代谢中的作用仍有待观察。体内重组增加对细胞并不总是有益的,并且面临各种限制。此外,细菌细胞中会激活一些机制,导致基因组重组,以抑制高活性RecA蛋白的表达。高活性RecA蛋白的调控方式非常有趣,目前正在不同的模型系统中进行研究。

相似文献

1
[Enzymatic control of homologous recombination in Escherichia coli cells and hyper-recombination].[大肠杆菌细胞中同源重组的酶促控制与超重组]
Mol Biol (Mosk). 2013 Mar-Apr;47(2):205-17. doi: 10.7868/s0026898413020031.
2
Protein interactions in genetic recombination in Escherichia coli. Interactions involving RecO and RecR overcome the inhibition of RecA by single-stranded DNA-binding protein.大肠杆菌基因重组中的蛋白质相互作用。涉及RecO和RecR的相互作用克服了单链DNA结合蛋白对RecA的抑制作用。
J Biol Chem. 1994 Nov 25;269(47):30005-13.
3
Biochemical basis of hyper-recombinogenic activity of Pseudomonas aeruginosa RecA protein in Escherichia coli cells.铜绿假单胞菌RecA蛋白在大肠杆菌细胞中高重组活性的生化基础。
Mol Microbiol. 1998 Feb;27(4):727-38. doi: 10.1046/j.1365-2958.1998.00718.x.
4
Direct imaging of RecA nucleation and growth on single molecules of SSB-coated ssDNA.直接观察 RecA 在单分子 SSB 包被 ssDNA 上的成核和生长。
Nature. 2012 Nov 8;491(7423):274-8. doi: 10.1038/nature11598. Epub 2012 Oct 24.
5
Biochemical interaction of the Escherichia coli RecF, RecO, and RecR proteins with RecA protein and single-stranded DNA binding protein.大肠杆菌RecF、RecO和RecR蛋白与RecA蛋白及单链DNA结合蛋白的生化相互作用。
Proc Natl Acad Sci U S A. 1993 May 1;90(9):3875-9. doi: 10.1073/pnas.90.9.3875.
6
Regulation of bacterial RecA protein function.细菌RecA蛋白功能的调控。
Crit Rev Biochem Mol Biol. 2007 Jan-Feb;42(1):41-63. doi: 10.1080/10409230701260258.
7
Replication restart in UV-irradiated Escherichia coli involving pols II, III, V, PriA, RecA and RecFOR proteins.紫外线照射的大肠杆菌中的复制重新启动涉及聚合酶II、III、V、PriA、RecA和RecFOR蛋白。
Mol Microbiol. 2002 Feb;43(3):617-28. doi: 10.1046/j.1365-2958.2002.02747.x.
8
Cosuppression of recF, recR and recO mutations by mutant recA alleles in Escherichia coli cells.大肠杆菌细胞中recA突变等位基因对recF、recR和recO突变的共抑制作用。
Mutat Res. 1993 Aug;294(2):157-66. doi: 10.1016/0921-8777(93)90024-b.
9
RecFOR function is required for DNA repair and recombination in a RecA loading-deficient recB mutant of Escherichia coli.在大肠杆菌RecA装载缺陷型recB突变体中,DNA修复和重组需要RecFOR功能。
Genetics. 2003 Feb;163(2):485-94. doi: 10.1093/genetics/163.2.485.
10
A RecA mutant, RecA(730), suppresses the recombination deficiency of the RecBC(1004)D-chi* interaction in vitro and in vivo.一种RecA突变体RecA(730),在体外和体内均能抑制RecBC(1004)D-chi*相互作用的重组缺陷。
J Mol Biol. 2007 Feb 2;365(5):1314-25. doi: 10.1016/j.jmb.2006.10.090. Epub 2006 Nov 1.

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