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采用振动光谱和分子动力学模拟研究尿素/水混合物的结构和动力学。

Structure and dynamics of urea/water mixtures investigated by vibrational spectroscopy and molecular dynamics simulation.

机构信息

Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.

出版信息

J Phys Chem B. 2013 Oct 24;117(42):13291-300. doi: 10.1021/jp4037217. Epub 2013 Jul 25.

Abstract

Urea/water is an archetypical "biological" mixture and is especially well-known for its relevance to protein thermodynamics as urea acts as a protein denaturant at high concentration. This behavior has given rise to an extended debate concerning urea's influence on water structure. On the basis of a variety of methods and of definitions of the water structure, urea has been variously described as a structure-breaker, a structure-maker, or as remarkably neutral toward water. Because of its sensitivity to microscopic structure and dynamics, vibrational spectroscopy can help resolve these debates. We report experimental and theoretical spectroscopic results for the OD stretch of HOD/H2O/urea mixtures (linear IR, 2DIR, and pump-probe anisotropy decay) and for the CO stretch of urea-D4/D2O mixtures (linear IR only). Theoretical results are obtained using existing approaches for water and a modification of a frequency map developed for acetamide. All absorption spectra are remarkably insensitive to urea concentration, consistent with the idea that urea only very weakly perturbs the water structure. Both this work and experiments by Rezus and Bakker, however, show that water's rotational dynamics are slowed down by urea. Analysis of the simulations casts doubt on the suggestion that urea immobilizes particular doubly hydrogen bonded water molecules.

摘要

尿素/水是一种典型的“生物”混合物,尤其因其与蛋白质热力学的相关性而闻名,因为在高浓度下尿素会使蛋白质变性。这种行为引发了关于尿素对水结构影响的广泛争论。基于各种方法和水结构的定义,尿素被描述为结构破坏剂、结构形成剂,或者对水表现出显著的中性。由于其对微观结构和动力学的敏感性,振动光谱可以帮助解决这些争论。我们报告了 HOD/H2O/urea 混合物的 OD 伸缩(线性 IR、2DIR 和泵浦-探测各向异性衰减)和尿素-D4/D2O 混合物的 CO 伸缩(仅线性 IR)的实验和理论光谱结果。理论结果是使用现有的水方法和针对乙酰胺开发的频率图的修改获得的。所有吸收光谱对尿素浓度都非常不敏感,这与尿素仅非常弱地干扰水结构的观点一致。然而,这项工作和 Rezus 和 Bakker 的实验都表明,尿素会使水的旋转动力学减慢。模拟分析对尿素固定特定双氢键水分子的说法提出了质疑。

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