Department of Biotechnology, Faculty of Bioresource Sciences, Akita Prefectural University, 241-438 Kaidobata-Nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Microb Ecol. 2013 Oct;66(3):639-46. doi: 10.1007/s00248-013-0261-9. Epub 2013 Jul 12.
The effects of inundation caused by the 2011 Tohoku tsunami on soil bacterial communities in agricultural fields were evaluated. Bacterial communities were compared across three different types of soil, unflooded field (UF) soil, soil flooded for 2 weeks (short term (ST)), and soil flooded for 2 months (long term (LT)), using polymerase chain reaction-pyrosequencing of 16S rRNA genes. Acidobacteria were dominant in UF, with a relative abundance of approximately 35 %, and Proteobacteria dominated flooded soils (30-67 %). Hierarchical cluster analysis indicated that the community structure of soil bacteria in flooded soils (ST and LT) clearly differed from that in UF. Differences between LT and ST fields were rarely observed in terms of chemical properties and microbial community structure at the phylum level. However, sulfur-oxidizing bacteria (SOB) and nitrite-oxidizing bacteria (NOB) in LT tended to occur at high and low abundances, respectively. Halothiobacillus, a halotolerant SOB, was detected in all LT fields. Unexpectedly, a zeta-Proteobacteria, which had previously only been detected in marine environments, was detected in LT fields only. Our results demonstrate that the effects of the 2011 Tohoku tsunami on soil bacterial communities in agricultural fields may have lasted at least 1 year. Furthermore, SOB, NOB, and zeta-Proteobacteria may serve as indicators of the effects of seawater inundation on microorganisms.
评估了 2011 年东北海啸引发的洪水对农田土壤细菌群落的影响。使用 16S rRNA 基因聚合酶链反应-焦磷酸测序比较了三种不同土壤(未淹没农田(UF)土壤、淹没 2 周的土壤(短期(ST))和淹没 2 个月的土壤(长期(LT)))的细菌群落。UF 中优势菌为酸杆菌,相对丰度约为 35%,而洪水土壤中优势菌为变形菌(30-67%)。层次聚类分析表明,洪水土壤(ST 和 LT)中的土壤细菌群落结构明显不同于 UF。LT 和 ST 田间在化学性质和门水平的微生物群落结构方面差异很少。然而,LT 中的硫氧化菌(SOB)和亚硝酸盐氧化菌(NOB)的丰度分别较高和较低。在所有 LT 田中均检测到耐盐 SOB 卤单胞菌。出乎意料的是,先前仅在海洋环境中检测到的ζ-变形菌仅在 LT 田中检测到。我们的结果表明,2011 年东北海啸对农田土壤细菌群落的影响可能至少持续了 1 年。此外,SOB、NOB 和ζ-变形菌可能成为海水淹没对微生物影响的指示菌。