Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
J Phys Chem A. 2013 Aug 22;117(33):8001-9. doi: 10.1021/jp404408h. Epub 2013 Aug 5.
The molecular dynamics in the crystal and the thermodynamic functions of the β-polymorph of glycine have been determined from a combination of molecular translation-libration frequencies reflecting the temperature dependence of atomic displacement parameters (ADPs), with frequencies derived from ONIOM(DFT:PM3) calculations on a 15-molecule β-glycine cluster. ADPs have been obtained from variable-temperature diffraction data to 0.5 Å resolution collected with X-ray synchrotron (10-300 K) and sealed tube radiation (50-298 K). At the higher temperatures, the ADPs of β-glycine from synchrotron are larger than those from sealed tube probably due to different experimental conditions. The lattice vibration frequencies from normal-mode analysis of ADPs and the internal vibration frequencies from ONIOM(B3LYP/6-311+G(2d,p):PM3) calculations agree with those from spectroscopy. Estimation of thermodynamic functions using the vibrational frequencies, the Einstein and Debye models of heat capacity, and the room-temperature compressibility provides C(p), H(vib), and S(vib) that agree with those from calorimetry. The β-phase with higher H and G is found to be less stable than the α-phase in the temperature range of the experiment.
已通过结合反映原子位移参数(ADPs)温度依赖性的分子平移-振动频率,以及对 15 个β-甘氨酸分子簇进行 ONIOM(DFT:PM3)计算得出的频率,确定了β-甘氨酸晶体中的分子动力学和热力学函数。通过 X 射线同步辐射(10-300 K)和密封管辐射(50-298 K)收集的变温衍射数据获得了 ADPs,分辨率为 0.5 Å。在较高温度下,同步加速器的β-甘氨酸 ADP 比密封管中的大,可能是由于实验条件不同。从 ADP 正则模态分析得出的晶格振动频率和从 ONIOM(B3LYP/6-311+G(2d,p):PM3)计算得出的内部振动频率与光谱一致。使用振动频率、爱因斯坦和德拜热容模型以及室温压缩性估算热力学函数,提供了与量热法一致的 C(p)、H(vib)和 S(vib)。在实验温度范围内,发现具有较高 H 和 G 的β相不如α相稳定。