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刚性手性三环内酰胺中的非平面三级酰胺。肽基团变形和振动旋光活性。

Nonplanar tertiary amides in rigid chiral tricyclic dilactams. Peptide group distortions and vibrational optical activity.

机构信息

Institute of Organic Chemistry and Biochemistry AS CR, Prague 6, Czech Republic.

出版信息

J Phys Chem B. 2013 Aug 22;117(33):9626-42. doi: 10.1021/jp405226k. Epub 2013 Aug 13.

DOI:10.1021/jp405226k
PMID:23866013
Abstract

We investigate amide nonplanarity in vibrational optical activity (VOA) spectra of tricyclic spirodilactams 5,8-diazatricyclo[6,3,0,0(1,5)]undecan-4,9-dione (I) and its 6,6',7,7'-tetradeuterio derivative (II). These rigid molecules constrain amide groups to nonplanar geometries with twisted pyramidal arrangements of bonds to amide nitrogen atoms. We have collected a full range vibrational circular dichroism (VCD) and Raman optical activity (ROA) spectra including signals of C-H and C-D stretching vibrations. We report normal-mode analysis and a comparison of calculated to experimental VCD and ROA. The data provide band-to-band assignment and offer a possibility to evaluate roles of constrained nonplanar tertiary amide groups and rigid chiral skeletons. Nonplanarity shows as single-signed VCD and ROA amide I signals, prevailing the couplets expected to arise from the amide-amide interaction. Amide-amide coupling dominates amide II (mainly C'-N stretching, modified in tertiary amides by the absence of a N-H bond) transitions (strong couplet in VCD, no significant ROA) probably due to the close proximity of amide nitrogen atoms. At lower wavenumbers, ROA spectra exhibit another likely manifestation of amide nonplanarity, showing signals of amide V (δ(oop)(N-C) at ~570 cm(-1)) and amide VI (δ(oop)(C'═O) at ~700 cm(-1) and ~650 cm(-1)) vibrations.

摘要

我们研究了振动旋光活性(VOA)光谱中三环螺二氢呋喃 5,8-二氮杂三环[6.3.0.0(1,5)]十一烷-4,9-二酮(I)及其 6,6',7,7'-四氘代物(II)中酰胺的非平面性。这些刚性分子将酰胺基团限制在非平面几何形状中,键的扭曲三角锥排列与酰胺氮原子相连。我们已经收集了包括 C-H 和 C-D 伸缩振动信号在内的全振动圆二色性(VCD)和拉曼旋光活性(ROA)光谱。我们报告了正常模式分析和计算与实验 VCD 和 ROA 的比较。这些数据提供了带对带的分配,并提供了评估约束非平面叔酰胺基团和刚性手性骨架作用的可能性。非平面性表现为单签名的 VCD 和 ROA 酰胺 I 信号,优先出现预期由酰胺-酰胺相互作用产生的偶合。酰胺-酰胺耦合主导酰胺 II(主要为 C'-N 伸缩,在叔酰胺中由于没有 N-H 键而被修饰)跃迁(VCD 中的强偶合,ROA 中没有显著信号)可能是由于酰胺氮原子的接近。在较低的波数处,ROA 光谱显示酰胺非平面性的另一种可能表现形式,显示酰胺 V(δ(oop)(N-C) 在约 570 cm(-1))和酰胺 VI(δ(oop)(C'═O) 在约 700 cm(-1) 和约 650 cm(-1))振动的信号。

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