Smrčok Lubomír, Mach Pavel, Le Bail Armel
Department of Theoretical Chemistry, Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, Bratislava SK-845 36, Slovak Republic.
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2013 Aug;69(Pt 4):395-404. doi: 10.1107/S2052519213013365. Epub 2013 Jun 22.
The crystal structure of 1,2,3,3,4,4,5,5,6,6-decafluorocyclohex-1-ene (decafluorocyclohex-1-ene, C6F10) was solved in direct space from neutron powder diffraction data previously collected at 4.2 K [Pawley, G. S. (1981). J. Appl. Cryst. 14, 357-361] and refined by energy minimization in the solid state. To optimize the positions of the 64 atoms in the monoclinic computational cell the PBESOL and hybrid PBE0 functionals were used. The crystal structure of the title compound, which is liquid at room temperature, is built of antiparallel pairs of molecules assembled into molecular columns stacked along the a axis. Dominating the crystal-building forces are weak intermolecular dispersion interactions. Bonding conditions in the structure were analysed by theoretical molecular calculations of representative next-neighbor molecular dimers carried out using dispersion-corrected density functional theory (DFT) functionals and the SCS-MP2 wavefunction method. The largest interaction energy is of the order of ∼ 21 kJ mol(-1), above the interaction energy of a benzene dimer (11.3 kJ mol(-1)) and close to that of a water dimer (20.9 kJ mol(-1)). The interaction energy for the second most stable dimer can be compared with either that of a benzene dimer or of a C-H...π hydrogen bond. The remaining five weakly interacting dimers (∼ 4.2-8.4 kJ mol(-1)) can be characterized as having stronger interactions than those of methane dimers (-2.2 kJ mol(-1)), but weaker than those of benzene molecule pairs or weak C-H...C interactions for instance.
1,2,3,3,4,4,5,5,6,6-十氟环己-1-烯(十氟环己-1-烯,C6F10)的晶体结构是根据先前在4.2 K下收集的中子粉末衍射数据在直接空间中解析得到的[Pawley, G. S. (1981). J. Appl. Cryst. 14, 357 - 361],并通过固态能量最小化进行了精修。为了优化单斜计算晶胞中64个原子的位置,使用了PBESOL和杂化PBE0泛函。标题化合物在室温下为液体,其晶体结构由反平行的分子对组成,这些分子对组装成沿a轴堆叠的分子柱。主导晶体形成力的是弱分子间色散相互作用。通过使用色散校正密度泛函理论(DFT)泛函和SCS - MP2波函数方法对代表性的次近邻分子二聚体进行理论分子计算,分析了结构中的键合条件。最大相互作用能约为~21 kJ mol(-1),高于苯二聚体的相互作用能(11.3 kJ mol(-1)),且接近水二聚体的相互作用能(20.9 kJ mol(-1))。第二稳定二聚体的相互作用能可与苯二聚体或C - H...π氢键的相互作用能相比较。其余五个弱相互作用二聚体(~4.2 - 8.4 kJ mol(-1))的特征是其相互作用比甲烷二聚体的相互作用(-2.2 kJ mol(-1))更强,但比苯分子对的相互作用或例如弱C - H...C相互作用更弱。