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金黄色葡萄球菌核酸酶稳定性的 pH 依赖性与三态变性模型不兼容。

The pH dependence of staphylococcal nuclease stability is incompatible with a three-state denaturation model.

机构信息

Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR 72701, USA.

出版信息

Biophys Chem. 2013 Oct-Nov;180-181:86-94. doi: 10.1016/j.bpc.2013.06.018. Epub 2013 Jul 1.

DOI:10.1016/j.bpc.2013.06.018
PMID:23892194
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3770747/
Abstract

Six single substitution mutations, V66F, V66G, V66N, V66Q, V66S, V66T, and V66Y, were made in the background of a highly stable triple mutant (P117G, H124L, and S128A) of staphylococcal nuclease. The thermodynamic stabilities of wild type staphylococcal nuclease, of the stable triple mutant and of its six variants were determined by guanidine hydrochloride denaturation in thirteen different buffers spanning the pH range 4.5 to 10.2. Within experimental error the values of [Formula: see text] and mGuHCl for the various proteins measured over this wide range of pH maintain a constant offset from one another, tracing a series of approximately parallel curves. This data offers an independent means of determining the error of stabilities and slopes determined by guanidine hydrochloride denaturations and shows that previous error estimates are accurate. More importantly, this behavior cannot be reconciled with a three-state denaturation model for staphylococcal nuclease. The large variations in mGuHCl observed in these mutants must therefore arise from other causes.

摘要

在金黄色葡萄球菌核酸酶高度稳定的三重突变体(P117G、H124L 和 S128A)背景下,共产生了六个单一取代突变(V66F、V66G、V66N、V66Q、V66S、V66T 和 V66Y)。通过在 13 种不同的缓冲液中进行盐酸胍变性,测定了野生型金黄色葡萄球菌核酸酶、稳定的三重突变体及其六种变体的热力学稳定性,该 pH 范围为 4.5 至 10.2。在实验误差范围内,在如此宽的 pH 范围内测量的各种蛋白质的[Formula: see text]和 mGuHCl 值彼此保持恒定的偏移,描绘了一系列大致平行的曲线。这些数据为通过盐酸胍变性确定稳定性和斜率的误差提供了独立的方法,并表明先前的误差估计是准确的。更重要的是,这种行为不能与金黄色葡萄球菌核酸酶的三态变性模型相协调。因此,在这些突变体中观察到的 mGuHCl 的巨大变化必然是由其他原因引起的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/7e9e05bf9a6f/nihms502182f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/9ff7fbcaccdf/nihms502182f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/54be2f6f1891/nihms502182f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/d2a106570a7d/nihms502182f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/7e9e05bf9a6f/nihms502182f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/9ff7fbcaccdf/nihms502182f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/54be2f6f1891/nihms502182f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/d2a106570a7d/nihms502182f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef65/3770747/7e9e05bf9a6f/nihms502182f4.jpg

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本文引用的文献

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Thermodynamic principles for the engineering of pH-driven conformational switches and acid insensitive proteins.用于工程 pH 驱动构象开关和酸不敏感蛋白的热力学原理。
Biophys Chem. 2011 Nov;159(1):217-26. doi: 10.1016/j.bpc.2011.06.016. Epub 2011 Jul 7.
3
Subdomain-specific collapse of denatured staphylococcal nuclease revealed by single molecule fluorescence resonance energy transfer measurements.
单分子荧光共振能量转移测量揭示的变性葡萄球菌核酸酶的亚结构域特异性折叠
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Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease.葡萄球菌核酸酶中 Asp 和 Glu 残基的 pKa 值的分子决定因素。
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High tolerance for ionizable residues in the hydrophobic interior of proteins.蛋白质疏水内部对可电离残基具有高耐受性。
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Electrostatic effects in a network of polar and ionizable groups in staphylococcal nuclease.葡萄球菌核酸酶中极性和可电离基团网络中的静电效应。
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Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation.通过荧光和圆二色性监测的葡萄球菌核酸酶野生型和突变体的热变性相似:没有证据表明存在除两态热变性之外的其他情况。
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