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在腺病毒DNA复制的体外起始测定中具有活性的单链DNA模板的突变分析。

Mutational analysis of single-stranded DNA templates active in the in vitro initiation assay for adenovirus DNA replication.

作者信息

Dobbs L, Zhao L J, Sripad G, Padmanabhan R

机构信息

Department of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City 66103.

出版信息

Virology. 1990 Sep;178(1):43-51. doi: 10.1016/0042-6822(90)90377-4.

DOI:10.1016/0042-6822(90)90377-4
PMID:2389559
Abstract

Three distinct domains, A, the minimal origin, as well as B and C, the binding sites for the host nuclear factors, are required for efficient initiation of adenovirus (Ad) DNA replication at the termini. The initiation reaction was examined using partially purified nuclear extracts and various single-stranded oligomers as DNA templates. We observed that single-stranded oligomers containing Ad2 minimal origin (Ori) sequences (bp 1-18) from the I-strand of the Ad2 genome supported preterminal protein-dCMP complex formation in vitro. Using oligomers containing point mutations in the Ad2 minimal Ori sequence, six positions were identified as important to the function of the Ad2 minimal Ori sequence. Point mutations at position 7, 8, or 11 virtually abolished the ability of the oligomer to support the initiation reaction. Point mutations at position 4, 9, or 17 were found to decrease the ability of the oligomers to support the initiation reaction to 33, 67, and 58% of control, respectively. An oligomer complementary to the I-strand of the Ad2 minimal Ori was found to block initiation on minimal Ori template. A number of randomly selected nonspecific oligomers did not, in general, serve as templates for initiation with the exception of two oligomers, one of which was found to be about threefold more active than the control minimal Ori template. The biological significance of the in vitro initiation of Ad2 DNA replication on single-stranded DNA templates is discussed.

摘要

腺病毒(Ad)DNA在末端高效起始复制需要三个不同的结构域:A,即最小起始点,以及B和C,即宿主核因子的结合位点。使用部分纯化的核提取物和各种单链寡聚物作为DNA模板来检测起始反应。我们观察到,含有来自Ad2基因组I链的Ad2最小起始点(Ori)序列(碱基对1 - 18)的单链寡聚物在体外支持前末端蛋白 - dCMP复合物的形成。使用在Ad2最小Ori序列中含有点突变的寡聚物,确定了六个位置对Ad2最小Ori序列的功能很重要。第7、8或11位的点突变几乎消除了寡聚物支持起始反应的能力。发现第4、9或17位的点突变分别将寡聚物支持起始反应的能力降低至对照的33%、67%和58%。发现与Ad2最小Ori的I链互补的寡聚物可阻断在最小Ori模板上的起始反应。除了两种寡聚物外,一般来说,许多随机选择的非特异性寡聚物不能作为起始反应的模板,其中一种寡聚物的活性比对照最小Ori模板高约三倍。本文讨论了在单链DNA模板上体外起始Ad2 DNA复制的生物学意义。

相似文献

1
Mutational analysis of single-stranded DNA templates active in the in vitro initiation assay for adenovirus DNA replication.在腺病毒DNA复制的体外起始测定中具有活性的单链DNA模板的突变分析。
Virology. 1990 Sep;178(1):43-51. doi: 10.1016/0042-6822(90)90377-4.
2
Template requirements for the initiation of adenovirus DNA replication.腺病毒DNA复制起始的模板要求。
Proc Natl Acad Sci U S A. 1984 Jan;81(1):100-4. doi: 10.1073/pnas.81.1.100.
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Origin of adenovirus DNA replication. Role of the nuclear factor I binding site in vivo.腺病毒DNA复制的起源。核因子I结合位点在体内的作用。
J Mol Biol. 1985 Nov 5;186(1):129-36. doi: 10.1016/0022-2836(85)90263-3.
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DNA sequences required for the in vitro replication of adenovirus DNA.腺病毒DNA体外复制所需的DNA序列。
Proc Natl Acad Sci U S A. 1984 May;81(10):3069-73. doi: 10.1073/pnas.81.10.3069.
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Replication of origin containing adenovirus DNA fragments that do not carry the terminal protein.不含末端蛋白的含腺病毒DNA片段的复制起点的复制
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DNA sequences required for the initiation of adenovirus type 4 DNA replication in vitro.体外启动4型腺病毒DNA复制所需的DNA序列。
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Template requirements for in vivo replication of adenovirus DNA.腺病毒DNA体内复制的模板要求
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Conserved sequences at the origin of adenovirus DNA replication.腺病毒DNA复制起始点的保守序列。
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Initiation of adenovirus DNA replication. II. Structural requirements using synthetic oligonucleotide adenovirus templates.腺病毒DNA复制的起始。II. 使用合成寡核苷酸腺病毒模板的结构要求。
J Biol Chem. 1988 Jul 15;263(20):9809-17.
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Identification of two distinct regions within the adenovirus minimal origin of replication that are required for adenovirus type 4 DNA replication in vitro.鉴定腺病毒最小复制起点内两个不同区域,它们是4型腺病毒DNA体外复制所必需的。
J Virol. 1991 Sep;65(9):5037-44. doi: 10.1128/JVI.65.9.5037-5044.1991.

引用本文的文献

1
In vitro replication of bacteriophage PRD1 DNA. Characterization of the protein-primed initiation site.噬菌体PRD1 DNA的体外复制。蛋白质引发起始位点的特性分析。
Nucleic Acids Res. 1993 Aug 11;21(16):3725-30. doi: 10.1093/nar/21.16.3725.
2
A precursor terminal protein-trinucleotide intermediate during initiation of adenovirus DNA replication: regeneration of molecular ends in vitro by a jumping back mechanism.腺病毒DNA复制起始过程中的前体末端蛋白-三核苷酸中间体:通过回跳机制在体外再生分子末端
EMBO J. 1994 Dec 1;13(23):5786-92. doi: 10.1002/j.1460-2075.1994.tb06917.x.
3
Initiation of phi 29 DNA replication occurs at the second 3' nucleotide of the linear template: a sliding-back mechanism for protein-primed DNA replication.
φ29 DNA复制的起始发生在线性模板的第二个3'核苷酸处:蛋白质引发DNA复制的滑回机制。
Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9579-83. doi: 10.1073/pnas.89.20.9579.