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利用统计温度分子动力学和复制交换汪-兰德au 方法研究溶液中两亲脂质的相变行为。

Examining the phase transition behavior of amphiphilic lipids in solution using statistical temperature molecular dynamics and replica-exchange Wang-Landau methods.

机构信息

Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA.

出版信息

J Chem Phys. 2013 Aug 7;139(5):054505. doi: 10.1063/1.4816520.

Abstract

Two different techniques - replica-exchange Wang-Landau (REWL) and statistical temperature molecular dynamics (STMD) - were applied to systematically study the phase transition behavior of self-assembling lipids as a function of temperature using an off-lattice lipid model. Both methods allow the direct calculation of the density of states with improved efficiency compared to the original Wang-Landau method. A 3-segment model of amphiphilic lipids solvated in water has been studied with varied particle interaction energies (ε) and lipid concentrations. The phase behavior of the lipid molecules with respect to bilayer formation has been characterized through the calculation of the heat capacity as a function of temperature, in addition to various order parameters and general visual inspection. The simulations conducted by both methods can go to very low temperatures with the whole system exhibiting well-ordered structures. With optimized parameters, several bilayer phases are observed within the temperature range studied, including gel phase bilayers with frozen water, mixed water (i.e., frozen and liquid water), and liquid water, and a more fluid bilayer with liquid water. The results obtained from both methods, STMD and REWL, are consistently in excellent agreement with each other, thereby validating both the methods and the results.

摘要

两种不同的技术——复制交换汪-兰德au(REWL)和统计温度分子动力学(STMD)——被应用于使用无格点脂质模型系统地研究自组装脂质的相变行为随温度的变化。与原始的汪-兰德au方法相比,这两种方法都可以提高效率,直接计算态密度。研究了一种 3 段模型的两亲性脂质在水中的溶剂化,其粒子相互作用能(ε)和脂质浓度不同。通过计算热容随温度的变化,以及各种序参数和一般的直观检查,对脂质分子相对于双层形成的相行为进行了表征。通过这两种方法进行的模拟可以达到非常低的温度,整个系统呈现出有序的结构。通过优化参数,在研究的温度范围内观察到了几种双层相,包括带有冻结水的凝胶相双层、混合水(即冻结水和液态水)和液态水,以及具有液态水的更具流动性的双层。这两种方法(STMD 和 REWL)的结果非常一致,相互验证了这两种方法和结果。

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本文引用的文献

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Scalable replica-exchange framework for Wang-Landau sampling.用于王-朗道抽样的可扩展副本交换框架。
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):023302. doi: 10.1103/PhysRevE.90.023302. Epub 2014 Aug 5.
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Generic, hierarchical framework for massively parallel Wang-Landau sampling.用于大规模并行 Wang-Landau 抽样的通用层次框架。
Phys Rev Lett. 2013 May 24;110(21):210603. doi: 10.1103/PhysRevLett.110.210603. Epub 2013 May 22.
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Replica exchange statistical temperature molecular dynamics algorithm.复制交换统计温度分子动力学算法。
J Phys Chem B. 2012 Jul 26;116(29):8646-53. doi: 10.1021/jp300366j. Epub 2012 May 15.
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Microcanonical entropy inflection points: key to systematic understanding of transitions in finite systems.微正则熵拐点:系统理解有限系统中转变的关键。
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011127. doi: 10.1103/PhysRevE.84.011127. Epub 2011 Jul 18.
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Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan;81(1 Pt 1):011802. doi: 10.1103/PhysRevE.81.011802. Epub 2010 Jan 5.
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Replica exchange statistical temperature Monte Carlo.复制交换统计温度蒙特卡洛方法
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