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基于半胱氨酸蛋白酶 B 基因的犬利什曼原虫环介导等温扩增检测方法的建立与评价。

Development and evaluation of a loop-mediated isothermal amplification assay for rapid detection of Leishmania infantum in canine leishmaniasis based on cysteine protease B genes.

机构信息

Institut Pasteur de Tunis, Laboratoire d'Epidémiologie et d'Ecologie Parasitaire (LR00SP04), Tunis, Tunisia.

出版信息

Vet Parasitol. 2013 Nov 15;198(1-2):78-84. doi: 10.1016/j.vetpar.2013.07.038. Epub 2013 Aug 3.

Abstract

We developed a Leishmania infantum specific LAMP assay that was carried out using a set of, six primers targeting the cysteine protease B multi copy gene of L. infantum. Our result shows that we, successfully detect the L. infantum DNA and that amplification is specific as no cross reaction was seen, with L. major, L. tropica, L. turanica, L. aethiopica, L. tarentolae, L. gerbilii, Trypanosoma cruzi or, human genomic DNA. When compared to conventional cpb based PCR, the sensitivity of LAMP assay, was higher with a detection limit of 50 fg/μl of genomic L. infantum parasite DNA. Accurate and rapid, diagnosis of canine leishmaniasis (CanL) is an important issue that allows early treatment and, prevents transmission. Our developed LAMP assay was used to evaluate occurrences of Leishmania infantum in seventy five (75) dogs from the field. Blood samples were used to perform LAMP assay, classical PCR, IFAT and microscopy that was used as gold standard. The IFAT in addition to, microscopy, are the basic techniques used for CanL diagnosis at the School of Veterinary Medicine, where we obtained our samples. Compared to molecular methods, the serology (IFAT) test shows the, best sensitivity (88.57%) with, however, a much lower specificity (52.5%) due to a relatively high, number of false-positive results (22 animals). The PCR assay shows a low sensitivity (37.14%) and, specificity around (82.5%). Our LAMP assay shows a suitable sensitivity (54%) and a good specificity, (80%), with however, positive (70%) and negative (66%) predictive values. Furthermore, the best, positive likelihood ratio (LR+) was obtained by LAMP assay (2.7). This technique presents the highest, kappa value (with a fair agreement of 0.34). Moreover, the relative stability of the reagents indicates, that LAMP may be a good alternative to a conventional PCR, especially under field conditions. Finally in, a brief cost evaluation, the LAMP assay compares favorably with other molecular diagnostic tests. This, is the first study that evaluates the L. infantum specific LAMP alongside other diagnostics tools for, CanL. Our results indicate a suitable sensitivity and specificity for the developed LAMP assay that could, has usefulness application on dogs and human L. infantum diagnosis.

摘要

我们开发了一种利什曼原虫特异性 LAMP 检测方法,该方法使用一组针对利什曼原虫多拷贝基因的胱氨酸蛋白酶 B 的六个引物进行。我们的结果表明,我们成功地检测到了利什曼原虫 DNA,并且扩增是特异性的,因为没有与利什曼原虫、热带利什曼原虫、北非利什曼原虫、埃塞俄比亚利什曼原虫、非洲爪蟾利什曼原虫、沙鼠利什曼原虫、克氏锥虫或人基因组 DNA 发生交叉反应。与基于 cpb 的常规 PCR 相比,LAMP 检测的灵敏度更高,对 50 fg/μl 基因组利什曼原虫寄生虫 DNA 的检测限为 50 fg/μl。准确快速地诊断犬利什曼病(CanL)是一个重要问题,可以早期治疗并防止传播。我们开发的 LAMP 检测方法用于评估来自现场的 75 只狗中的利什曼原虫感染情况。使用血液样本进行 LAMP 检测、经典 PCR、IFAT 和显微镜检查,后者作为金标准。IFAT 除了显微镜检查外,是兽医学院用于 CanL 诊断的基本技术,我们在那里获得了样本。与分子方法相比,血清学(IFAT)测试显示出最佳的敏感性(88.57%),但特异性(52.5%)较低,因为相对较高的假阳性结果(22 只动物)。PCR 检测的敏感性(37.14%)和特异性(82.5%)较低。我们的 LAMP 检测的敏感性(54%)和特异性(80%)适中,阳性(70%)和阴性(66%)预测值良好。此外,LAMP 检测获得了最佳的阳性似然比(LR+)(2.7)。该技术具有最高的κ 值(具有 0.34 的公平一致性)。此外,试剂的相对稳定性表明,LAMP 可能是传统 PCR 的良好替代品,特别是在野外条件下。最后,在简要的成本评估中,LAMP 检测与其他分子诊断检测相比具有优势。这是首次评估利什曼原虫特异性 LAMP 与其他用于 CanL 的诊断工具的研究。我们的结果表明,开发的 LAMP 检测具有适当的敏感性和特异性,可用于犬类和人类利什曼原虫的诊断。

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