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跨膜肽的设计:应对棘手情况。

Design of transmembrane peptides: coping with sticky situations.

作者信息

Rath Arianna, Deber Charles M

机构信息

Division of Molecular Structure & Function, Research Institute, Hospital for Sick Children, Toronto, ON, Canada.

出版信息

Methods Mol Biol. 2013;1063:197-210. doi: 10.1007/978-1-62703-583-5_11.

DOI:10.1007/978-1-62703-583-5_11
PMID:23975779
Abstract

Membrane proteins have central roles in cellular processes ranging from nutrient uptake to cell-cell communication, and are key drug targets. However, research on α-helical integral membrane proteins is in its relative infancy vs. water-soluble proteins, largely because of their water insolubility when extracted from their native membrane environment. Peptides with sequences that correspond to the membrane-spanning segments of α-helical integral membrane proteins, termed transmembrane (TM) peptides, provide valuable tools for the characterization of these molecules. Here we describe in detail protocols for the design of TM peptides from the sequences of natural α-helical integral membrane proteins and outline strategies for their synthesis and for improving their solubility properties.

摘要

膜蛋白在从营养物质摄取到细胞间通讯等一系列细胞过程中发挥着核心作用,并且是关键的药物靶点。然而,与水溶性蛋白相比,α-螺旋整合膜蛋白的研究仍处于相对起步阶段,这主要是因为当它们从天然膜环境中提取出来时具有水不溶性。具有与α-螺旋整合膜蛋白跨膜片段相对应序列的肽,即跨膜(TM)肽,为这些分子的表征提供了有价值的工具。在此,我们详细描述了从天然α-螺旋整合膜蛋白序列设计TM肽的方案,并概述了其合成策略以及改善其溶解性的策略。

相似文献

1
Design of transmembrane peptides: coping with sticky situations.跨膜肽的设计:应对棘手情况。
Methods Mol Biol. 2013;1063:197-210. doi: 10.1007/978-1-62703-583-5_11.
2
Peptide models of membrane protein folding.膜蛋白折叠的肽模型。
Biochemistry. 2009 Apr 14;48(14):3036-45. doi: 10.1021/bi900184j.
3
Transmembrane domain of cystic fibrosis transmembrane conductance regulator: design, characterization, and secondary structure of synthetic peptides m1-m6.囊性纤维化跨膜传导调节因子的跨膜结构域:合成肽m1 - m6的设计、表征及二级结构
Biochemistry. 1998 Jan 20;37(3):844-53. doi: 10.1021/bi972293n.
4
Alpha-helical transmembrane peptides: a "divide and conquer" approach to membrane proteins.α-螺旋跨膜肽:一种用于膜蛋白的“分而治之”策略。
Chem Phys Lipids. 2010 Jan;163(1):1-26. doi: 10.1016/j.chemphyslip.2009.07.009.
5
Characterization of peptides corresponding to the seven transmembrane domains of human adenosine A2a receptor.对应于人腺苷A2a受体七个跨膜结构域的肽段的表征。
Biochemistry. 2004 Oct 12;43(40):12945-54. doi: 10.1021/bi0492051.
6
Peptides as transmembrane segments: decrypting the determinants for helix-helix interactions in membrane proteins.作为跨膜片段的肽:解密膜蛋白中螺旋-螺旋相互作用的决定因素。
Biopolymers. 2007;88(2):217-32. doi: 10.1002/bip.20668.
7
Peptides in membranes: helicity and hydrophobicity.膜中的肽:螺旋性与疏水性。
Biopolymers. 1995;37(5):295-318. doi: 10.1002/bip.360370503.
8
Aqueous solubility and membrane interactions of hydrophobic peptides with peptoid tags.带有类肽标签的疏水肽的水溶性及与膜的相互作用
Biopolymers. 2004;76(2):110-8. doi: 10.1002/bip.10566.
9
Design, expression, and purification of de novo transmembrane "hairpin" peptides.从头设计、表达和纯化跨膜“发夹”肽。
Biopolymers. 2012;98(6):546-56. doi: 10.1002/bip.22149.
10
Hydrophobicity and prediction of the secondary structure of membrane proteins and peptides.膜蛋白和肽的疏水性及二级结构预测
Membr Cell Biol. 2001 Jul;14(5):673-97.

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J Biol Chem. 2017 Feb 17;292(7):2703-2713. doi: 10.1074/jbc.M116.762849. Epub 2017 Jan 9.
2
The transmembrane domains of the bacterial cell division proteins FtsB and FtsL form a stable high-order oligomer.细菌细胞分裂蛋白 FtsB 和 FtsL 的跨膜结构域形成稳定的高阶寡聚体。
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