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共聚焦激光扫描显微镜和三维体积渲染在提高木炭化石记录分辨率方面的新应用。

Novel application of confocal laser scanning microscopy and 3D volume rendering toward improving the resolution of the fossil record of charcoal.

作者信息

Belcher Claire M, Punyasena Surangi W, Sivaguru Mayandi

机构信息

Department of Geography, University of Exeter, Exeter, United Kingdom.

出版信息

PLoS One. 2013 Aug 15;8(8):e72265. doi: 10.1371/journal.pone.0072265. eCollection 2013.

Abstract

Variations in the abundance of fossil charcoals between rocks and sediments are assumed to reflect changes in fire activity in Earth's past. These variations in fire activity are often considered to be in response to environmental, ecological or climatic changes. The role that fire plays in feedbacks to such changes is becoming increasingly important to understand and highlights the need to create robust estimates of variations in fossil charcoal abundance. The majority of charcoal based fire reconstructions quantify the abundance of charcoal particles and do not consider the changes in the morphology of the individual particles that may have occurred due to fragmentation as part of their transport history. We have developed a novel application of confocal laser scanning microscopy coupled to image processing that enables the 3-dimensional reconstruction of individual charcoal particles. This method is able to measure the volume of both microfossil and mesofossil charcoal particles and allows the abundance of charcoal in a sample to be expressed as total volume of charcoal. The method further measures particle surface area and shape allowing both relationships between different size and shape metrics to be analysed and full consideration of variations in particle size and size sorting between different samples to be studied. We believe application of this new imaging approach could allow significant improvement in our ability to estimate variations in past fire activity using fossil charcoals.

摘要

岩石和沉积物中化石木炭丰度的变化被认为反映了地球过去火灾活动的变化。火灾活动的这些变化通常被认为是对环境、生态或气候变化的响应。火灾在这些变化的反馈中所起的作用对于理解来说变得越来越重要,并突出了对化石木炭丰度变化进行可靠估计的必要性。大多数基于木炭的火灾重建量化了木炭颗粒的丰度,而没有考虑到由于破碎作为其运输历史的一部分而可能发生的单个颗粒形态的变化。我们开发了一种结合图像处理的共聚焦激光扫描显微镜的新应用,能够对单个木炭颗粒进行三维重建。这种方法能够测量微化石和中化石木炭颗粒的体积,并允许将样品中木炭的丰度表示为木炭的总体积。该方法还测量颗粒表面积和形状,从而能够分析不同尺寸和形状指标之间的关系,并全面考虑不同样品之间颗粒尺寸和尺寸分选的变化。我们相信,这种新的成像方法的应用可以显著提高我们利用化石木炭估计过去火灾活动变化的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3cfd/3744490/cb5d6a14a9e1/pone.0072265.g001.jpg

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