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基于离子分子相互作用势的离子液体阳离子疏水性和细胞毒性的计算机模拟预测:白血病大鼠细胞系、发光菌和绿色巴夫藻

In silico modelling for predicting the cationic hydrophobicity and cytotoxicity of ionic liquids towards the Leukemia rat cell line, Vibrio fischeri and Scenedesmus vacuolatus based on molecular interaction potentials of ions.

机构信息

a Centre for Environmental Research and Sustainable Technology (UFT), University of Bremen , Bremen , Germany.

出版信息

SAR QSAR Environ Res. 2013 Oct;24(10):863-82. doi: 10.1080/1062936X.2013.821092. Epub 2013 Aug 29.

Abstract

In this study we present prediction models for estimating in silico the cationic hydrophobicity and the cytotoxicity (log [1/EC50]) of ionic liquids (ILs) towards the Leukemia rat cell line (IPC-81), the marine bacterium Vibrio fischeri and the limnic green algae Scenedesmus vacuolatus using linear free energy relationship (LFER) descriptors computed by COSMO calculations. The LFER descriptors used for the prediction model (i.e. excess molar refraction (E), dipolarity/polarizability (S), hydrogen-bonding acidity (A), hydrogen-bonding basicity (B) and McGowan volume (V)) were calculated using sub-descriptors (sig2, sig3, HBD3, HBA4, MR, and volume) derived from COSMO-RS, COSMO and OBPROP. With the combination of two solute descriptors (B, V) of the cation we were able to predict cationic hydrophobicity values (log ko ) with r (2) = 0.987 and standard error (SE) = 0.139 log units. By using the calculated log k o values, we were able to deduce a linear toxicity prediction model. In the second prediction study for the cytotoxicity of ILs, analysis of descriptor sensitivity helped us to determine that the McGowan volume (V) terms of the cation was the most important predictor of cytotoxicity and to simplify prediction models for cytotoxicity of ILs towards the IPC-81 (r (2) of 0.778, SE of 0.450 log units), Vibrio fischeri (r (2) of 0.762, SE of 0.529 log units) and Scenedesmus vacuolatus (r (2) of 0.776, SE of 0.825 log units). The robustness and predictivity of the two models for IPC-81 and Vibrio fischeri were checked by comparing the calculated SE and r (2) (coefficient of determination) values of the test set.

摘要

在这项研究中,我们使用 COSMO 计算得出的线性自由能关系 (LFER) 描述符,为阳离子的离子液体 (IL) 提供了估算阳离子疏水性和细胞毒性 (log [1/EC50]) 的预测模型,这些描述符针对白血病大鼠细胞系 (IPC-81)、海洋细菌 Vibrio fischeri 和淡水绿藻 Scenedesmus vacuolatus。用于预测模型的 LFER 描述符(即超额摩尔折射 (E)、偶极/极化率 (S)、氢键酸度 (A)、氢键碱度 (B) 和 McGowan 体积 (V))是使用从 COSMO-RS、COSMO 和 OBPROP 中得出的子描述符 (sig2、sig3、HBD3、HBA4、MR 和体积) 计算得出的。通过结合阳离子的两个溶质描述符 (B、V),我们能够预测阳离子疏水性值 (log ko),相关 r (2) 值为 0.987,标准误差 (SE) 为 0.139 log 单位。通过使用计算得出的 log k o 值,我们能够推导出线性毒性预测模型。在第二项关于 IL 细胞毒性的预测研究中,对描述符敏感性的分析有助于我们确定阳离子的 McGowan 体积 (V) 是预测毒性的最重要因素,并简化了 IL 对 IPC-81(r (2) 值为 0.778,SE 值为 0.450 log 单位)、Vibrio fischeri(r (2) 值为 0.762,SE 值为 0.529 log 单位)和 Scenedesmus vacuolatus(r (2) 值为 0.776,SE 值为 0.825 log 单位)的细胞毒性预测模型。通过比较测试集的计算 SE 和 r (2)(决定系数)值,检查了这两个模型对 IPC-81 和 Vibrio fischeri 的稳健性和预测能力。

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