Department of Theoretical Chemistry, Chemical Center, Lund University, P.O. Box 124 S-221 00, Lund, Sweden.
J Comput Chem. 2013 Nov 15;34(30):2657-65. doi: 10.1002/jcc.23428. Epub 2013 Sep 4.
A parallel procedure for an effective optimization of relative position and orientation between two or more fragments has been implemented in the MOLCAS program package. By design, the procedure does not perturb the electronic structure of a system under the study. The original composite system is divided into frozen fragments and internal coordinates linking those fragments are the only optimized parameters. The procedure is capable to handle fully independent (no border atoms) fragments as well as fragments connected by covalent bonds. In the framework of the procedure, the optimization of relative position and orientation of the fragments are carried out in the internal "Z-matrix" coordinates using numerical derivatives. The total number of required single points energy evaluations scales with the number of fragments rather than with the total number of atoms in the system. The accuracy and the performance of the procedure have been studied by test calculations for a representative set of two- and three-fragment molecules with artificially distorted structures. The developed approach exhibits robust and smooth convergence to the reference optimal structures. As only a few internal coordinates are varied during the procedure, the proposed constrained fragment geometry optimization can be afforded even for high level ab initio methods like CCSD(T) and CASPT2. This capability has been demonstrated by applying the method to two larger cases, CCSD(T) and CASPT2 calculations on a positively charged benzene lithium complex and on the oxygen molecule interacting to iron porphyrin molecule, respectively.
一种有效的优化两个或多个片段之间相对位置和取向的并行程序已经在 MOLCAS 程序包中实现。该程序的设计不会干扰研究系统的电子结构。原始复合系统被分为冻结片段,连接这些片段的内部坐标是唯一优化的参数。该程序能够处理完全独立的(没有边界原子)片段以及通过共价键连接的片段。在该程序的框架内,使用数值导数在内部“Z 矩阵”坐标中进行片段相对位置和取向的优化。所需单点能量评估的总数与系统中的片段数而不是原子总数成比例。该程序的准确性和性能已经通过对一组具有人为扭曲结构的代表性二聚体和三聚体分子的测试计算进行了研究。所开发的方法表现出对参考最优结构的稳健和平滑收敛。由于在程序过程中仅改变了几个内部坐标,因此即使对于像 CCSD(T)和 CASPT2 这样的高级从头算方法,也可以负担得起所提出的约束片段几何优化。该方法已通过将其应用于两个更大的情况来证明,即 CCSD(T)和 CASPT2 计算分别在正电荷苯锂络合物和氧分子与铁卟啉分子相互作用上。