Facultad de Ciencias, Universidad Nacional Autonoma de Mexico, Apdo. Postal 70-407, Cd. Universitaria, 04510, Mexico D.F, Mexico.
Orig Life Evol Biosph. 2013 Oct;43(4-5):363-75. doi: 10.1007/s11084-013-9344-3. Epub 2013 Sep 8.
The absence of the hydrophobic norvaline and norleucine in the inventory of protein amino acids is readdressed. The well-documented intracellular accumulation of these two amino acids results from the low-substrate specificity of the branched-chain amino acid biosynthetic enzymes that act over a number of related α-ketoacids. The lack of absolute substrate specificity of leucyl-tRNA synthase leads to a mischarged norvalyl-tRNA(Leu) that evades the translational proofreading activities and produces norvaline-containing proteins, (cf. Apostol et al. J Biol Chem 272:28980-28988, 1997). A similar situation explains the presence of minute but detectable amounts of norleucine in place of methionine. Since with few exceptions both leucine and methionine are rarely found in the catalytic sites of most enzymes, their substitution by norvaline and norleucine, respectively, would have not been strongly hindered in small structurally simple catalytic polypeptides during the early stages of biological evolution. The report that down-shifts of free oxygen lead to high levels of intracellular accumulation of pyruvate and the subsequent biosynthesis of norvaline (Soini et al. Microb Cell Factories 7:30, 2008) demonstrates the biochemical and metabolic consequences of the development of a highly oxidizing environment. The results discussed here also suggest that a broader definition of biomarkers in the search for extraterrestrial life may be required.
重新审视蛋白质氨基酸组成中缺乏疏水性的正缬氨酸和正亮氨酸。这两种氨基酸在细胞内的积累有充分的文献记载,这是由于支链氨基酸生物合成酶对许多相关的α-酮酸的底物特异性低所致。亮氨酰-tRNA 合成酶缺乏绝对的底物特异性,导致被错误加载的正缬氨酰-tRNA(Leu)逃避翻译校对活性,从而产生含有正缬氨酸的蛋白质(见 Apostol 等人,J Biol Chem 272:28980-28988, 1997)。类似的情况也解释了为什么会有微量但可检测到的正亮氨酸取代蛋氨酸的存在。由于除了少数情况外,亮氨酸和蛋氨酸在大多数酶的催化部位都很少发现,因此在生物进化的早期,在结构简单的小催化多肽中,它们分别被正缬氨酸和正亮氨酸取代的情况不会受到强烈阻碍。有报道称,氧分压降低会导致细胞内丙酮酸积累水平升高,随后合成正缬氨酸(Soini 等人,Microb Cell Factories 7:30, 2008),这证明了高度氧化环境的生化和代谢后果。这里讨论的结果还表明,在寻找外星生命时,可能需要对生物标志物进行更广泛的定义。