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DNA 拉伸过度转变由动态介观模型中的熔融诱导。

DNA overstretching transition induced by melting in a dynamical mesoscopic model.

机构信息

Departamento de Física de la Materia Condensada, Universidad de Zaragoza, 50009 Zaragoza, Spain.

出版信息

J Chem Phys. 2013 Sep 7;139(9):095101. doi: 10.1063/1.4819263.

Abstract

We present a phenomenological dynamical model describing the force induced melting as responsible for the DNA overstretching transition. The denaturation mechanism is developed under the framework of the mesoscopic one-dimensional Peyrard-Bishop-Dauxois (PBD) picture which models the melting features of a polymer chain by means of a Morse potential and the stacking interaction. We find a good agreement with both the experimental overstretching curve and the asymmetric hysteretic properties with different simulation times. The comparison of the standard PBD model with a modification of the Morse potential which takes into account the interaction with the solvent has been also successfully investigated.

摘要

我们提出了一个描述力诱导熔融的唯象动力学模型,该模型是导致 DNA 拉伸过度转变的原因。变性机制是在介观一维 Peyrard-Bishop-Dauxois(PBD)图像的框架下发展起来的,该图像通过 Morse 势和堆积相互作用来模拟聚合物链的熔融特征。我们发现与实验过度拉伸曲线以及不同模拟时间的不对称滞后特性有很好的一致性。我们还成功地研究了标准 PBD 模型与考虑与溶剂相互作用的 Morse 势修正之间的比较。

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