McInnes Bridget T, Stevenson Mark
Minnesota Supercomputing Institute, University of Minnesota, 117 Pleasant St SE, Minneapolis, MN 55455, USA.
Natural Language Processing Group, Department of Computer Science, University of Sheffield, Regent Court, 211 Portobello, Sheffield S1 4DP, United Kingdom.
J Biomed Inform. 2014 Feb;47:83-90. doi: 10.1016/j.jbi.2013.09.009. Epub 2013 Sep 26.
Automatic processing of biomedical documents is made difficult by the fact that many of the terms they contain are ambiguous. Word Sense Disambiguation (WSD) systems attempt to resolve these ambiguities and identify the correct meaning. However, the published literature on WSD systems for biomedical documents report considerable differences in performance for different terms. The development of WSD systems is often expensive with respect to acquiring the necessary training data. It would therefore be useful to be able to predict in advance which terms WSD systems are likely to perform well or badly on. This paper explores various methods for estimating the performance of WSD systems on a wide range of ambiguous biomedical terms (including ambiguous words/phrases and abbreviations). The methods include both supervised and unsupervised approaches. The supervised approaches make use of information from labeled training data while the unsupervised ones rely on the UMLS Metathesaurus. The approaches are evaluated by comparing their predictions about how difficult disambiguation will be for ambiguous terms against the output of two WSD systems. We find the supervised methods are the best predictors of WSD difficulty, but are limited by their dependence on labeled training data. The unsupervised methods all perform well in some situations and can be applied more widely.
生物医学文献的自动处理存在困难,因为其中包含的许多术语具有歧义性。词义消歧(WSD)系统试图解决这些歧义并确定正确的含义。然而,关于生物医学文献WSD系统的已发表文献表明,不同术语的性能存在相当大的差异。WSD系统的开发在获取必要的训练数据方面通常成本高昂。因此,能够提前预测哪些术语WSD系统可能表现良好或不佳将是很有用的。本文探讨了各种方法,用于估计WSD系统在广泛的歧义生物医学术语(包括歧义单词/短语和缩写)上的性能。这些方法包括监督式和非监督式方法。监督式方法利用来自标记训练数据的信息,而非监督式方法则依赖于UMLS元词表。通过将它们对歧义术语消歧难度的预测与两个WSD系统的输出进行比较来评估这些方法。我们发现监督式方法是WSD难度的最佳预测器,但受到其对标记训练数据的依赖的限制。非监督式方法在某些情况下都表现良好,并且可以更广泛地应用。