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基于朗之万动力学模拟的纳米孔中聚合物输运诱导阻塞离子电流的研究。

Study on the polymer translocation induced blockade ionic current inside a nanopore by Langevin dynamics simulation.

机构信息

Department of Physics, Zhejiang University, Hangzhou 310027, People's Republic of China.

出版信息

J Phys Condens Matter. 2013 Nov 20;25(46):465101. doi: 10.1088/0953-8984/25/46/465101. Epub 2013 Oct 7.

DOI:10.1088/0953-8984/25/46/465101
PMID:24099747
Abstract

The blockade ionic current inside a nanopore due to polymer translocation is studied using a three-dimensional Langevin dynamics method. The blockade current IB is dependent on the polymer length N, polymer configuration, polymer-pore interaction, and charge of the polymer. The behavior of IB can be explained using four factors: (1) the volume vacancy fraction fV inside the pore; (2) the conformation of the polymer; (3) the location of the polymer inside the pore; and (4) the total charge Ztot inside the pore. We find that IB increases with fV but decreases with increasing |Ztot|. The influence of the polymer's conformation is complex, dependent on the size of polymer RG and the cross-sectional size of the pore s. A compact conformation can decrease IB when RG > s but increase IB when RG < s. For the latter case, the conformation of the polymer is too small to block the pore, thus providing a broad passage for the ions. At the same fV, monomers will locate close to the surface with a large polymer-pore attraction, which also provides a large IB.

摘要

使用三维 Langevin 动力学方法研究了聚合物穿过后纳米孔内的阻塞离子电流。阻塞电流 IB 取决于聚合物长度 N、聚合物构象、聚合物-孔相互作用和聚合物的电荷。IB 的行为可以用四个因素来解释:(1)孔内的体积空位分数 fV;(2)聚合物的构象;(3)聚合物在孔内的位置;(4)孔内的总电荷 Ztot。我们发现,IB 随 fV 的增加而增加,但随 |Ztot| 的增加而减小。聚合物构象的影响很复杂,取决于聚合物 RG 的大小和孔的横截面积 s。当 RG > s 时,紧凑构象会降低 IB,但当 RG < s 时,IB 会增加。在后一种情况下,聚合物的构象太小而无法阻塞孔,从而为离子提供了宽阔的通道。在相同的 fV 下,单体将与具有较大聚合物-孔吸引力的表面靠近,这也提供了较大的 IB。

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