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葡聚糖的分子与晶体结构:电子衍射与X射线衍射联合研究。II. 一种低温水合多晶型物。

The molecular and crystal structure of dextrans: a combined electron and X-ray diffraction study. II. A low temperature, hydrated polymorph.

作者信息

Guizard C, Chanzy H, Sarko A

出版信息

J Mol Biol. 1985 Jun 5;183(3):397-408. doi: 10.1016/0022-2836(85)90010-5.

DOI:10.1016/0022-2836(85)90010-5
PMID:2410620
Abstract

The crystal and molecular structure of a dextran hydrate has been determined through combined electron and X-ray diffraction analysis, aided by stereochemical model refinement. A total of 65 hk0 electron diffraction intensities were measured on frozen single crystals held at the temperature of liquid nitrogen, to a resolution limit of 1.6 A. The X-ray intensities were measured from powder patterns recorded from collections of the single crystals. The structure crystallizes in a monoclinic unit cell with parameters a = 25.71 A, b = 10.21 A, c (chain axis) = 7.76 A and beta = 91.3 degrees. The space group is P2(1) with b axis unique. The unit cell contains six chains and eight water molecules, with three chains of the same polarity and four water molecules constituting the asymmetric unit. Along the chain direction the asymmetric unit is a dimer residue; however, the individual glucopyranose residues are very nearly related by a molecular 2-fold screw axis. The conformation of the chain is very similar to that in the anhydrous structure, but the chain packing differs in the two structures in that the rotational positions of the chains about the helix axes (the chain setting angles) are considerably different. The chains still pack in the form of sheets that are separated by water molecules. The difference in the chain setting angles between the anhydrous and hydrate structures corresponds to the angle between like unit cell axes observed in the diffraction diagrams recorded from hybrid crystals containing both polymorphs. Despite some beam damage effects, the structure was determined to a satisfactory degree of agreement, with the residuals R''(electron diffraction) = 0.258 and R(X-ray) = 0.127.

摘要

通过结合电子衍射和X射线衍射分析,并借助立体化学模型精修,已确定了一种葡聚糖水合物的晶体和分子结构。在液氮温度下保持的冷冻单晶上测量了总共65个hk0电子衍射强度,分辨率极限为1.6 Å。X射线强度是从单晶集合记录的粉末图谱中测量的。该结构结晶于单斜晶胞中,参数为a = 25.71 Å,b = 10.21 Å,c(链轴)= 7.76 Å,β = 91.3°。空间群为P2(1),b轴为唯一轴。晶胞包含六条链和八个水分子,其中三条相同极性的链和四个水分子构成不对称单元。沿链方向,不对称单元是一个二聚体残基;然而,各个吡喃葡萄糖残基几乎通过分子2次螺旋轴相关。链的构象与无水结构中的非常相似,但两种结构中的链堆积不同,因为链围绕螺旋轴的旋转位置(链设置角)有很大差异。链仍然以被水分子隔开的片层形式堆积。无水结构和水合物结构之间链设置角的差异对应于在含有两种多晶型物的混合晶体记录的衍射图中观察到的类似晶胞轴之间的角度。尽管存在一些束损伤效应,但结构确定到了令人满意的一致程度,残余值R''(电子衍射)= 0.258,R(X射线)= 0.127。

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