Laboratory of Molecular Ecology and Biotechnology, National Research Council, Institute for Marine and Coastal Environment (IAMC-CNR), Detached Unit of Capo Granitola, Torretta Granitola 91021, Trapani, Italy.
Mar Drugs. 2013 Oct 30;11(11):4213-31. doi: 10.3390/md11114213.
Anemonia viridis is a widespread and extensively studied Mediterranean species of sea anemone from which a large number of polypeptide toxins, such as blood depressing substances (BDS) peptides, have been isolated. The first members of this class, BDS-1 and BDS-2, are polypeptides belonging to the β-defensin fold family and were initially described for their antihypertensive and antiviral activities. BDS-1 and BDS-2 are 43 amino acid peptides characterised by three disulfide bonds that act as neurotoxins affecting Kv3.1, Kv3.2 and Kv3.4 channel gating kinetics. In addition, BDS-1 inactivates the Nav1.7 and Nav1.3 channels. The development of a large dataset of A. viridis expressed sequence tags (ESTs) and the identification of 13 putative BDS-like cDNA sequences has attracted interest, especially as scientific and diagnostic tools. A comparison of BDS cDNA sequences showed that the untranslated regions are more conserved than the protein-coding regions. Moreover, the KA/KS ratios calculated for all pairwise comparisons showed values greater than 1, suggesting mechanisms of accelerated evolution. The structures of the BDS homologs were predicted by molecular modelling. All toxins possess similar 3D structures that consist of a triple-stranded antiparallel β-sheet and an additional small antiparallel β-sheet located downstream of the cleavage/maturation site; however, the orientation of the triple-stranded β-sheet appears to differ among the toxins. To characterise the spatial expression profile of the putative BDS cDNA sequences, tissue-specific cDNA libraries, enriched for BDS transcripts, were constructed. In addition, the proper amplification of ectodermal or endodermal markers ensured the tissue specificity of each library. Sequencing randomly selected clones from each library revealed ectodermal-specific expression of ten BDS transcripts, while transcripts of BDS-8, BDS-13, BDS-14 and BDS-15 failed to be retrieved, likely due to under-representation in our cDNA libraries. The calculation of the relative abundance of BDS transcripts in the cDNA libraries revealed that BDS-1, BDS-3, BDS-4, BDS-5 and BDS-6 are the most represented transcripts.
海葵是一种广泛分布且研究广泛的地中海海葵物种,从中分离出了大量多肽毒素,如降压物质(BDS)肽。该类别的第一批成员,BDS-1 和 BDS-2,是属于β-防御素折叠家族的多肽,最初因其具有降血压和抗病毒活性而被描述。BDS-1 和 BDS-2 是 43 个氨基酸的肽,其特征为三个二硫键,作为神经毒素影响 Kv3.1、Kv3.2 和 Kv3.4 通道门控动力学。此外,BDS-1 使 Nav1.7 和 Nav1.3 通道失活。大量海葵表达序列标签(EST)数据集的开发和 13 种推定的 BDS 样 cDNA 序列的鉴定引起了人们的兴趣,尤其是作为科学和诊断工具。BDS cDNA 序列的比较表明,非翻译区比蛋白质编码区更保守。此外,所有成对比较的 KA/KS 比值均大于 1,表明存在加速进化的机制。BDS 同源物的结构通过分子建模进行预测。所有毒素都具有相似的 3D 结构,由三链反平行 β-折叠和位于切割/成熟位点下游的另外一个小反平行 β-折叠组成;然而,三链 β-折叠的取向似乎在毒素之间有所不同。为了描述推定的 BDS cDNA 序列的空间表达谱,构建了富含 BDS 转录本的组织特异性 cDNA 文库。此外,外胚层或内胚层标记物的适当扩增确保了每个文库的组织特异性。从每个文库中随机选择克隆进行测序,揭示了 10 个 BDS 转录本的外胚层特异性表达,而 BDS-8、BDS-13、BDS-14 和 BDS-15 的转录本未能被检索到,可能是由于我们的 cDNA 文库中代表性不足。计算 cDNA 文库中 BDS 转录本的相对丰度,结果表明 BDS-1、BDS-3、BDS-4、BDS-5 和 BDS-6 是最具代表性的转录本。