鞘氨醇单胞菌属菌株KK22的基因组草图序列，该菌株是从牧场土壤中分离出的一种能降解高分子量多环芳烃的细菌。
Draft Genome Sequence of Sphingobium sp. Strain KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Isolated from Cattle Pasture Soil.
作者信息
Maeda Allyn H, Nishi Shinro, Ozeki Yasuhiro, Ohta Yukari, Hatada Yuji, Kanaly Robert A
机构信息
Department of Life and Environmental System Science, Graduate School of Nanobiosciences, Yokohama City University, Kanazawa-ku, Yokohama, Japan.
出版信息
Genome Announc. 2013 Nov 7;1(6):e00911-13. doi: 10.1128/genomeA.00911-13.
Abstract
Sphingobium sp. strain KK22 was isolated from a bacterial consortium that originated from cattle pasture soil from Texas. Strain KK22 grows on phenanthrene and has been shown to biotransform the high-molecular-weight (HMW) polycyclic aromatic hydrocarbon (PAH) benz[a]anthracene. The genome of strain KK22 was sequenced to investigate the genes involved in aromatic pollutant biotransformation.
摘要
鞘氨醇单胞菌属菌株KK22是从一个细菌群落中分离出来的，该细菌群落源自德克萨斯州的牧场土壤。菌株KK22能在菲上生长，并已被证明可对高分子量（HMW）多环芳烃（PAH）苯并[a]蒽进行生物转化。对菌株KK22的基因组进行了测序，以研究参与芳香族污染物生物转化的基因。
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1
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Environ Toxicol Chem. 1999 Oct;18(10):2186-2190. doi: 10.1002/etc.5620181010.
2
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3
An integrated semiconductor device enabling non-optical genome sequencing.一种用于非光学基因组测序的集成半导体设备。
Nature. 2011 Jul 20;475(7356):348-52. doi: 10.1038/nature10242.
4
Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria.细菌对高分子量多环芳烃生物降解研究进展。
Microb Biotechnol. 2010 Mar;3(2):136-64. doi: 10.1111/j.1751-7915.2009.00130.x. Epub 2009 Jun 22.
5
Molecular characteristics of xenobiotic-degrading sphingomonads.降解外源化合物的鞘氨醇单胞菌的分子特征
Appl Microbiol Biotechnol. 2009 Jan;81(5):793-811. doi: 10.1007/s00253-008-1752-3. Epub 2008 Nov 11.
6
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7
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BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
8
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J Ind Microbiol Biotechnol. 2007 Sep;34(9):605-13. doi: 10.1007/s10295-007-0235-3. Epub 2007 Jul 24.
9
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
10
Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov.来自粉煤灰倾倒场的菲降解细菌——暗黑鞘氨醇单胞菌新种的描述以及阴沟鞘氨醇单胞菌重新分类为阴沟鞘氨醇杆菌新组合
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