Ranjan Amitabh, Banerjee Ramanuj, Pani Bibhusita, Sen Udayditya, Sen Ranjan
Laboratory of Transcription Biology; Center for DNA Fingerprinting and Diagnostics; Nampally, Hyderabad India.
Bacteriophage. 2013 Apr 1;3(2):e25657. doi: 10.4161/bact.25657.
Psu, a 20-kD bacteriophage P4 capsid decorating protein moonlights as a transcription antiterminator of the Rho-dependent termination. Psu forms specific complex with Rho protein, and affects the latter's ATP-dependent translocase activity along the nascent RNA. It forms a unique knotted dimer to take a V-shaped structure. The C-terminal helix of Psu makes specific contacts with a disordered region of Rho, encompassing the residues 139-153. An energy minimized structural model of the Rho-Psu complex reveals that the V-shaped Psu dimer forms a lid over the central channel of the Rho hexamer. This configuration of Psu causes a mechanical impediment to the translocase activity of Rho. The knowledge of structural and mechanistic basis of inhibition of Rho action by Psu may help to design peptide inhibitors for the conserved Rho-dependent transcription termination process of bacteria.
Psu是一种20千道尔顿的噬菌体P4衣壳修饰蛋白,它兼作Rho依赖性终止的转录抗终止因子。Psu与Rho蛋白形成特异性复合物,并影响后者沿新生RNA的ATP依赖性转位酶活性。它形成独特的纽结二聚体以呈V形结构。Psu的C末端螺旋与Rho的无序区域进行特异性接触,该区域包含139 - 153位残基。Rho - Psu复合物的能量最小化结构模型表明,V形的Psu二聚体在Rho六聚体的中央通道上形成一个盖子。Psu的这种构象对Rho的转位酶活性造成机械阻碍。关于Psu抑制Rho作用的结构和机制基础的知识可能有助于设计针对细菌保守的Rho依赖性转录终止过程的肽抑制剂。