VMRD Global Discovery, Zoetis, 333 Portage Street, Kalamazoo, MI 49007, USA.
Bioorg Med Chem Lett. 2013 Dec 15;23(24):6667-72. doi: 10.1016/j.bmcl.2013.10.044. Epub 2013 Oct 31.
The performance of several structure-based design (SBD) approaches in predicting the binding affinity of diverse small molecule inhibitors co-crystallized to human renin was assessed to ascertain the modeling tool and method of choice required when dealing with structure-based lead optimization projects. Most of the SBD approaches investigated here were able to provide qualitative guidance, but quantitative accuracy as well as decisive discrimination between [in]actives is still not within reach. Such an outcome suggests that the current methods need improvement to capture the overall physics of the binding phenomenon for consistent applications in a lead optimization setting.
评估了几种基于结构的设计(SBD)方法在预测与人类肾素共结晶的各种小分子抑制剂的结合亲和力方面的性能,以确定在处理基于结构的先导优化项目时所需的建模工具和方法。本文研究的大多数 SBD 方法都能够提供定性指导,但定量准确性和对[非]活性化合物的决定性区分仍然难以实现。这种结果表明,当前的方法需要改进,以捕捉结合现象的整体物理性质,以便在先导优化环境中进行一致的应用。