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基因组步移

Genome walking.

作者信息

Shapter Frances M, Waters Daniel L E

机构信息

Southern Cross Plant Science, Southern Cross University, Lismore, NSW, Australia.

出版信息

Methods Mol Biol. 2014;1099:133-46. doi: 10.1007/978-1-62703-715-0_12.

Abstract

Genome walking is a method for determining the DNA sequence of unknown genomic regions flanking a region of known DNA sequence. The Genome walking has the potential to capture 6-7 kb of sequence in a single round. Ideal for identifying gene promoter regions where only the coding region. Genome walking also has significant utility for capturing homologous genes in new species when there are areas in the target gene with strong sequence conservation to the characterized species. The increasing use of next-generation sequencing technologies will see the principles of genome walking adapted to in silico methods. However, for smaller projects, PCR-based genome walking will remain an efficient method of characterizing unknown flanking sequence.

摘要

基因组步移是一种用于确定已知DNA序列区域侧翼未知基因组区域DNA序列的方法。基因组步移有可能在一轮实验中捕获6 - 7 kb的序列。它非常适合用于识别仅知道编码区的基因启动子区域。当目标基因中存在与已鉴定物种有强序列保守性的区域时,基因组步移在捕获新物种中的同源基因方面也具有重要作用。随着下一代测序技术的日益广泛应用,基因组步移的原理将适用于计算机方法。然而,对于较小的项目,基于PCR的基因组步移仍将是表征未知侧翼序列的一种有效方法。

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