田菁共生菌及促进水稻生长的内生菌根瘤菌属菌株IRBG74的全基因组序列
Complete Genome Sequence of the Sesbania Symbiont and Rice Growth-Promoting Endophyte Rhizobium sp. Strain IRBG74.
作者信息
Crook Matthew B, Mitra Shubhajit, Ané Jean-Michel, Sadowsky Michael J, Gyaneshwar Prasad
机构信息
Department of Agronomy, University of Wisconsin-Madison, Madison, Wisconsin, USA.
出版信息
Genome Announc. 2013 Nov 21;1(6):e00934-13. doi: 10.1128/genomeA.00934-13.
Abstract
Rhizobium sp. strain IRBG74 is the first known nitrogen-fixing symbiont in the Agrobacterium/Rhizobium clade that nodulates the aquatic legume Sesbania sp. and is also a growth-promoting endophyte of wetland rice. Here, we present the sequence of the IRBG74 genome, which is composed of a circular chromosome, a linear chromosome, and a symbiotic plasmid, pIRBG74a.
摘要
根瘤菌属菌株IRBG74是农杆菌/根瘤菌分支中首个已知的固氮共生体，它能使水生豆科植物田菁结瘤，也是湿地水稻的促生长内生菌。在此，我们展示了IRBG74基因组序列，其由一条环状染色体、一条线性染色体和一个共生质粒pIRBG74a组成。
相似文献
1
Complete Genome Sequence of the Sesbania Symbiont and Rice Growth-Promoting Endophyte Rhizobium sp. Strain IRBG74.田菁共生菌及促进水稻生长的内生菌根瘤菌属菌株IRBG74的全基因组序列
Genome Announc. 2013 Nov 21;1(6):e00934-13. doi: 10.1128/genomeA.00934-13.
2
A rhamnose-deficient lipopolysaccharide mutant of Rhizobium sp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hosts Sesbania cannabina and wetland rice.根瘤菌属IRBG74的一种鼠李糖缺陷型脂多糖突变体在根部定殖以及与耐涝宿主红麻和湿地水稻的有益相互作用方面存在缺陷。
J Exp Bot. 2016 Oct;67(19):5869-5884. doi: 10.1093/jxb/erw354. Epub 2016 Oct 4.
3
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia.根瘤菌（土壤杆菌）菌株IRBG74和其他根瘤菌对田菁属物种的结瘤作用。
Environ Microbiol. 2009 Oct;11(10):2510-25. doi: 10.1111/j.1462-2920.2009.01975.x. Epub 2009 Jun 25.
4
A thiamine transporter is required for biofilm formation by Rhizobium sp. IRBG74.根瘤菌 sp.IRBG74 生物膜形成需要硫胺素转运蛋白。
FEMS Microbiol Lett. 2023 Jan 17;370. doi: 10.1093/femsle/fnad046.
5
sp. IRBG74 Alters Root Development by Affecting Auxin Signaling.菌株IRBG74通过影响生长素信号传导改变根系发育。
Front Microbiol. 2018 Jan 4;8:2556. doi: 10.3389/fmicb.2017.02556. eCollection 2017.
6
A new root-nodulating symbiont of the tropical legume Sesbania, Rhizobium sp. SIN-1, is closely related to R. galegae, a species that nodulates temperate legumes.热带豆科植物田菁的一种新的根瘤共生菌，即根瘤菌SIN-1，与能使温带豆科植物结瘤的盖氏根瘤菌密切相关。
FEMS Microbiol Lett. 1995 Dec 1;134(1):19-25. doi: 10.1111/j.1574-6968.1995.tb07908.x.
7
Molecular cloning and characterization of nodD genes from Rhizobium sp. SIN-1, a nitrogen-fixing symbiont of Sesbania and other tropical legumes.来自根瘤菌SIN-1（田菁和其他热带豆科植物的固氮共生菌）的nodD基因的分子克隆与特性分析
Curr Microbiol. 2002 Nov;45(5):378-82. doi: 10.1007/s00284-002-3772-z.
8
Genome sequence and comparative genomics of Rhizobium sp. Td3, a novel plant growth promoting phosphate solubilizing Cajanus cajan symbiont.根瘤菌属 Td3 的基因组序列和比较基因组学研究，一种新型的植物生长促进解磷共生固氮菌。
Microbiol Res. 2019 Jan;218:32-40. doi: 10.1016/j.micres.2018.09.007. Epub 2018 Sep 24.
9
Ensifer alkalisoli sp. nov. isolated from root nodules of Sesbania cannabina grown in saline-alkaline soils.盐碱土中华根瘤菌新种，从生长在盐碱土壤中的田菁根瘤中分离得到。
Int J Syst Evol Microbiol. 2016 Dec;66(12):5294-5300. doi: 10.1099/ijsem.0.001510. Epub 2016 Sep 19.
10
Complete genome of Rhizobium Norway, an ineffective micro-symbiont.挪威根瘤菌的全基因组，一种无效的微共生体。
Stand Genomic Sci. 2018 Dec 5;13:36. doi: 10.1186/s40793-018-0336-9. eCollection 2018.
引用本文的文献
1
Comparative genome analysis of -nodulating spp. revealing the symbiotic and transferrable characteristics of symbiosis plasmids.- 结瘤固氮菌属的比较基因组分析揭示了共生质粒的共生和可转移特征。
Microb Genom. 2023 May;9(5). doi: 10.1099/mgen.0.001004.
2
Literature Review on Health Emigration in Rare Diseases-A Machine Learning Perspective.罕见病健康移民的文献综述——基于机器学习的视角。
Int J Environ Res Public Health. 2023 Jan 30;20(3):2483. doi: 10.3390/ijerph20032483.
3
A ride through the epigenetic landscape: aging reversal by reprogramming.穿越表观遗传景观的旅程：重编程实现衰老逆转。
Geroscience. 2021 Apr;43(2):463-485. doi: 10.1007/s11357-021-00358-6. Epub 2021 Apr 6.
4
Distinct signaling routes mediate intercellular and intracellular rhizobial infection in Lotus japonicus.不同的信号通路介导了胞间和胞内的日本刺槐根瘤菌感染。
Plant Physiol. 2021 Apr 2;185(3):1131-1147. doi: 10.1093/plphys/kiaa049.
5
Structural Mapping of Mutations in Spike, RdRp and Orf3a Genes of SARS-CoV-2 in Influenza Like Illness (ILI) Patients.SARS-CoV-2 刺突蛋白、RdRp 和 Orf3a 基因的突变在流感样疾病（ILI）患者中的结构定位。
Viruses. 2021 Jan 19;13(1):136. doi: 10.3390/v13010136.
6
MicroRNA-494-3p inhibits formation of fast oxidative muscle fibres by targeting E1A-binding protein p300 in human-induced pluripotent stem cells.miRNA-494-3p 通过靶向人诱导多能干细胞中的 E1A 结合蛋白 p300 抑制快氧化肌纤维的形成。
Sci Rep. 2021 Jan 13;11(1):1161. doi: 10.1038/s41598-020-80742-y.
7
Unravelling the Network of Nuclear Matrix Metalloproteinases for Targeted Drug Design.解析核基质金属蛋白酶网络以进行靶向药物设计。
Biology (Basel). 2020 Dec 19;9(12):480. doi: 10.3390/biology9120480.
8
Why TDP-43? Why Not? Mechanisms of Metabolic Dysfunction in Amyotrophic Lateral Sclerosis.为什么是TDP-43？为什么不是？肌萎缩侧索硬化症中代谢功能障碍的机制。
Neurosci Insights. 2020 Sep 17;15:2633105520957302. doi: 10.1177/2633105520957302. eCollection 2020.
9
Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing.采用高通量测序技术对不丹芸香科木虱相关细菌群落进行特征描述。
BMC Microbiol. 2020 Jul 20;20(1):215. doi: 10.1186/s12866-020-01895-4.
10
Exposure to different arsenic species drives the establishment of iron- and sulfur-oxidizing bacteria on rice root iron plaques.暴露于不同的砷物种会促使铁和硫氧化菌在水稻根铁斑上定殖。
World J Microbiol Biotechnol. 2019 Jul 22;35(8):117. doi: 10.1007/s11274-019-2690-1.
本文引用的文献
1
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies.48株包含五个基因种的中华根瘤菌菌株核心基因组与辅助基因组的比较基因组学研究
Genome Biol. 2013 Feb 20;14(2):R17. doi: 10.1186/gb-2013-14-2-r17.
2
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data.显微镜——一个集成的微生物资源，用于基因组和代谢数据的管理和比较分析。
Nucleic Acids Res. 2013 Jan;41(Database issue):D636-47. doi: 10.1093/nar/gks1194. Epub 2012 Nov 27.
3
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia.根瘤菌（土壤杆菌）菌株IRBG74和其他根瘤菌对田菁属物种的结瘤作用。
Environ Microbiol. 2009 Oct;11(10):2510-25. doi: 10.1111/j.1462-2920.2009.01975.x. Epub 2009 Jun 25.
4
AMIGene: Annotation of MIcrobial Genes.AMIGene：微生物基因注释
Nucleic Acids Res. 2003 Jul 1;31(13):3723-6. doi: 10.1093/nar/gkg590.
Zotero 插件