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疟原虫的比较基因组学与系统生物学

Comparative Genomics and Systems Biology of Malaria Parasites .

作者信息

Cai Hong, Zhou Zhan, Gu Jianying, Wang Yufeng

机构信息

Department of Biology, University of Texas at San Antonio, San Antonio, TX 78249, USA.

出版信息

Curr Bioinform. 2012 Dec 1;7(4). doi: 10.2174/157489312803900965.

DOI:10.2174/157489312803900965
PMID:24298232
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3844129/
Abstract

Malaria is a serious infectious disease that causes over one million deaths yearly. It is caused by a group of protozoan parasites in the genus . No effective vaccine is currently available and the elevated levels of resistance to drugs in use underscore the pressing need for novel antimalarial targets. In this review, we survey omics centered developments in biology, which have set the stage for a quantum leap in our understanding of the fundamental processes of the parasite life cycle and mechanisms of drug resistance and immune evasion.

摘要

疟疾是一种严重的传染病,每年导致超过一百万人死亡。它由属的一组原生动物寄生虫引起。目前尚无有效的疫苗,且正在使用的药物耐药性水平不断升高,凸显了对新型抗疟靶点的迫切需求。在本综述中,我们概述了生物学中以组学为中心的进展,这些进展为我们在理解寄生虫生命周期的基本过程、耐药机制和免疫逃避机制方面实现巨大飞跃奠定了基础。

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1
Comparative Genomics and Systems Biology of Malaria Parasites .疟原虫的比较基因组学与系统生物学
Curr Bioinform. 2012 Dec 1;7(4). doi: 10.2174/157489312803900965.
2
Post-Genomic Approaches to Understanding Malaria Parasite Biology: Linking Genes to Biological Functions.后基因组时代理解疟原虫生物学的方法:将基因与生物学功能相联系
ACS Infect Dis. 2019 Aug 9;5(8):1269-1278. doi: 10.1021/acsinfecdis.9b00093. Epub 2019 Jun 20.
3
Protease-associated cellular networks in malaria parasite Plasmodium falciparum.疟原虫恶性疟原虫中与蛋白酶相关的细胞网络。
BMC Genomics. 2011 Dec 23;12 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2164-12-S5-S9.
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Proteomic approaches to studying drug targets and resistance in Plasmodium.用于研究疟原虫药物靶点和耐药性的蛋白质组学方法。
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Advances in omics-based methods to identify novel targets for malaria and other parasitic protozoan infections.基于组学的方法在鉴定疟疾和其他寄生虫原生动物感染的新靶标方面的进展。
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Evolution of Host Specificity by Malaria Parasites through Altered Mechanisms Controlling Genome Maintenance.疟原虫通过改变控制基因组维持的机制,导致宿主特异性进化。
mBio. 2020 Mar 17;11(2):e03272-19. doi: 10.1128/mBio.03272-19.
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Genomics and Genetics: New Insights into Malaria Pathogenesis, Drug Resistance, Epidemiology, and Evolution.基因组学与遗传学:疟疾发病机制、耐药性、流行病学和进化的新见解。
Clin Microbiol Rev. 2019 Jul 31;32(4). doi: 10.1128/CMR.00019-19. Print 2019 Sep 18.
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Biology: Insights Provided by Genomics, Transcriptomics and Proteomics.生物学:基因组学、转录组学和蛋白质组学提供的见解。
Front Cell Infect Microbiol. 2018 Feb 8;8:34. doi: 10.3389/fcimb.2018.00034. eCollection 2018.
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The resistome and genomic reconnaissance in the age of malaria elimination.抗药性基因组在消除疟疾时代的探索。
Dis Model Mech. 2019 Dec 19;12(12):dmm040717. doi: 10.1242/dmm.040717.
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Genomics and epigenetics of sexual commitment in Plasmodium.疟原虫中性别决定的基因组学与表观遗传学
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引用本文的文献

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PLoS Med. 2017 Nov 30;14(11):e1002451. doi: 10.1371/journal.pmed.1002451. eCollection 2017 Nov.
2
Frequent GU wobble pairings reduce translation efficiency in Plasmodium falciparum.疟原虫频繁的 GU 摇摆配对降低了翻译效率。
Sci Rep. 2017 Apr 7;7(1):723. doi: 10.1038/s41598-017-00801-9.

本文引用的文献

1
African monkeys are infected by Plasmodium falciparum nonhuman primate-specific strains.非洲猴子感染恶性疟原虫非人灵长类动物特异性株。
Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11948-53. doi: 10.1073/pnas.1109368108. Epub 2011 Jul 5.
2
Design of a variant surface antigen-supplemented microarray chip for whole transcriptome analysis of multiple Plasmodium falciparum cytoadherent strains, and identification of strain-transcendent rif and stevor genes.设计一种变体表面抗原补充的微阵列芯片,用于多个恶性疟原虫细胞黏附株的全转录组分析,并鉴定株间跨越的 rif 和 stevor 基因。
Malar J. 2011 Jun 30;10:180. doi: 10.1186/1475-2875-10-180.
3
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs.
全球转录组分析表明恶性疟原虫中有一个新的端粒相关 lncRNA 家族。
Genome Biol. 2011 Jun 20;12(6):R56. doi: 10.1186/gb-2011-12-6-r56.
4
Host range, host specificity and hypothesized host shift events among viruses of lower vertebrates.低等脊椎动物病毒的宿主范围、宿主特异性和假定的宿主转移事件。
Vet Res. 2011 May 18;42(1):67. doi: 10.1186/1297-9716-42-67.
5
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.
6
Worldwide sequence conservation of transmission-blocking vaccine candidate Pvs230 in Plasmodium vivax.全球范围内间日疟原虫传播阻断候选疫苗 Pvs230 的序列保守性。
Vaccine. 2011 Jun 10;29(26):4308-15. doi: 10.1016/j.vaccine.2011.04.028. Epub 2011 Apr 21.
7
An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations.一种优化的微阵列平台,用于检测恶性疟原虫野外种群中的基因组变异。
Genome Biol. 2011;12(4):R35. doi: 10.1186/gb-2011-12-4-r35. Epub 2011 Apr 8.
8
Identification of novel malarial cysteine protease inhibitors using structure-based virtual screening of a focused cysteine protease inhibitor library.基于结构的靶向半胱氨酸蛋白酶抑制剂文库虚拟筛选鉴定新型疟原虫半胱氨酸蛋白酶抑制剂
J Chem Inf Model. 2011 Apr 25;51(4):852-64. doi: 10.1021/ci200029y. Epub 2011 Mar 23.
9
A fresh look at the origin of Plasmodium falciparum, the most malignant malaria agent.重新审视最恶性疟原虫——恶性疟原虫的起源。
PLoS Pathog. 2011 Feb;7(2):e1001283. doi: 10.1371/journal.ppat.1001283. Epub 2011 Feb 24.
10
Are protozoan metacaspases potential parasite killers?原虫 MetaCaspases 是否可能成为寄生虫杀手?
Parasit Vectors. 2011 Feb 28;4:26. doi: 10.1186/1756-3305-4-26.