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一个由矮子和巨人组成的世界:单子叶植物延龄草科的基因组大小与染色体进化

A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family Melanthiaceae.

作者信息

Pellicer Jaume, Kelly Laura J, Leitch Ilia J, Zomlefer Wendy B, Fay Michael F

机构信息

Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, UK.

School of Biological and Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK.

出版信息

New Phytol. 2014 Mar;201(4):1484-1497. doi: 10.1111/nph.12617. Epub 2013 Dec 2.

DOI:10.1111/nph.12617
PMID:24299166
Abstract

• Since the occurrence of giant genomes in angiosperms is restricted to just a few lineages, identifying where shifts towards genome obesity have occurred is essential for understanding the evolutionary mechanisms triggering this process. • Genome sizes were assessed using flow cytometry in 79 species and new chromosome numbers were obtained. Phylogenetically based statistical methods were applied to infer ancestral character reconstructions of chromosome numbers and nuclear DNA contents. • Melanthiaceae are the most diverse family in terms of genome size, with C-values ranging more than 230-fold. Our data confirmed that giant genomes are restricted to tribe Parideae, with most extant species in the family characterized by small genomes. Ancestral genome size reconstruction revealed that the most recent common ancestor (MRCA) for the family had a relatively small genome (1C = 5.37 pg). Chromosome losses and polyploidy are recovered as the main evolutionary mechanisms generating chromosome number change. • Genome evolution in Melanthiaceae has been characterized by a trend towards genome size reduction, with just one episode of dramatic DNA accumulation in Parideae. Such extreme contrasting profiles of genome size evolution illustrate the key role of transposable elements and chromosome rearrangements in driving the evolution of plant genomes.

摘要

• 由于被子植物中巨大基因组的出现仅限于少数几个谱系,确定向基因组肥胖转变发生的位置对于理解引发这一过程的进化机制至关重要。

• 使用流式细胞术评估了79个物种的基因组大小,并获得了新的染色体数目。应用基于系统发育的统计方法来推断染色体数目和核DNA含量的祖先特征重建。

• 就基因组大小而言,藜芦科是最多样化的科,C值范围超过230倍。我们的数据证实,巨大基因组仅限于帕里德族,该科现存的大多数物种具有小基因组。祖先基因组大小重建显示,该科的最近共同祖先(MRCA)具有相对较小的基因组(1C = 5.37 pg)。染色体丢失和多倍体被认为是导致染色体数目变化的主要进化机制。

• 藜芦科的基因组进化的特点是基因组大小有减小的趋势,在帕里德族中只有一次显著的DNA积累事件。这种基因组大小进化的极端对比情况说明了转座元件和染色体重排在推动植物基因组进化中的关键作用。

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