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面向对象的贝叶斯网络在评估不平衡 DNA 混合物中 DIP-STR 分析结果中的应用

Object-oriented Bayesian networks for evaluating DIP-STR profiling results from unbalanced DNA mixtures.

机构信息

University of Lausanne, School of Criminal Justice, Institute of Forensic Science, le batochime, 1015 Lausanne-Dorigny, Switzerland.

出版信息

Forensic Sci Int Genet. 2014 Jan;8(1):159-69. doi: 10.1016/j.fsigen.2013.09.001. Epub 2013 Sep 13.

Abstract

The genetic characterization of unbalanced mixed stains remains an important area where improvement is imperative. In fact, with current methods for DNA analysis (Polymerase Chain Reaction with the SGM Plus multiplex kit), it is generally not possible to obtain a conventional autosomal DNA profile of the minor contributor if the ratio between the two contributors in a mixture is smaller than 1:10. This is a consequence of the fact that the major contributor's profile 'masks' that of the minor contributor. Besides known remedies to this problem, such as Y-STR analysis, a new compound genetic marker that consists of a Deletion/Insertion Polymorphism (DIP), linked to a Short Tandem Repeat (STR) polymorphism, has recently been developed and proposed elsewhere in literature. The present paper reports on the derivation of an approach for the probabilistic evaluation of DIP-STR profiling results obtained from unbalanced DNA mixtures. The procedure is based on object-oriented Bayesian networks (OOBNs) and uses the likelihood ratio as an expression of the probative value. OOBNs are retained in this paper because they allow one to provide a clear description of the genotypic configuration observed for the mixed stain as well as for the various potential contributors (e.g., victim and suspect). These models also allow one to depict the assumed relevance relationships and perform the necessary probabilistic computations.

摘要

不平衡混合样本的遗传特征分析仍然是一个亟待改进的重要领域。事实上,目前使用 DNA 分析的方法(聚合酶链式反应与 SGM Plus 多重试剂盒),如果混合物中两个供体的比例小于 1:10,则通常无法获得次要供体的常规常染色体 DNA 图谱。这是因为主要供体的图谱“掩盖”了次要供体的图谱。除了已知的解决此问题的方法,例如 Y-STR 分析外,最近还开发并在其他文献中提出了一种新的复合遗传标记,该标记由与短串联重复(STR)多态性相关的缺失/插入多态性(DIP)组成。本文报告了一种从不平衡 DNA 混合物中获得 DIP-STR 分析结果的概率评估方法。该程序基于面向对象的贝叶斯网络(OOBN),并使用似然比作为证据价值的表达。在本文中保留 OOBN 是因为它们允许清晰地描述混合样本以及各种潜在供体(例如受害者和嫌疑人)的基因型配置。这些模型还允许描述假定的相关关系并执行必要的概率计算。

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