Costa Paulo J, Marques Igor, Félix Vítor
Departamento de Química, CICECO and Secção Autónoma de Ciências da Saúde, Universidade de Aveiro, Aveiro 3810-193, Portugal.
Departamento de Química, CICECO and Secção Autónoma de Ciências da Saúde, Universidade de Aveiro, Aveiro 3810-193, Portugal.
Biochim Biophys Acta. 2014 Mar;1838(3):890-901. doi: 10.1016/j.bbamem.2013.11.021. Epub 2013 Dec 6.
The ability of a calix[4]arene derivative (CX-1), bearing four protonated NH3(+) groups located in the upper rim and aliphatic tails in the lower rim, to interact with a 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) model bilayer and promote transmembrane chloride transport was investigated by molecular dynamics (MD) simulations. Unconstrained MD simulations show that the interaction of CX-1 with DOPC occurs via the NH3(+) groups, which are able to establish electrostatic interactions and multiple hydrogen bonds with the DOPC phosphate groups, while the aliphatic tails point towards the water phase (when CX-1 starts from the water phase) or to the membrane (when CX-1 is initially positioned within the bilayer). The interaction does not induce any relevant perturbation on the biophysical properties of the bilayer system (area per lipid, thickness, and hydration) apart from a systematic increase in the order parameter of the C2 carbon atom of the sn-1 lipid tail, meaning that the bilayer conserves its integrity. Since total internalization of CX-1 was not observed in the unconstrained MD time-scale, constant velocity steered molecular dynamics (SMD) simulations were performed in order to simulate the CX-1 permeation across the bilayer. At pulling velocities lower than 0.0075 nmps(-1), chloride transport was observed. The Potential of Mean Force (PMF), calculated with the weighted histogram analysis method, indicates a barrier of ca. 58kJmol(-1) for this mobile carrier to cross the membrane.
研究了一种杯[4]芳烃衍生物(CX - 1)与1,2 - 二油酰 - sn - 甘油 - 3 - 磷酸胆碱(DOPC)模型双层相互作用并促进跨膜氯运输的能力。该杯[4]芳烃衍生物在上缘带有四个质子化的NH₃⁺基团,下缘带有脂肪族尾链,通过分子动力学(MD)模拟进行了研究。无约束MD模拟表明,CX - 1与DOPC的相互作用是通过NH₃⁺基团发生的,这些基团能够与DOPC磷酸基团建立静电相互作用和多个氢键,而脂肪族尾链则指向水相(当CX - 1从水相开始时)或指向膜(当CX - 1最初位于双层内时)。除了sn - 1脂质尾链的C2碳原子的序参数有系统性增加外,这种相互作用不会对双层系统的生物物理性质(每个脂质的面积、厚度和水合作用)产生任何相关扰动,这意味着双层保持其完整性。由于在无约束MD时间尺度内未观察到CX - 1的完全内化,因此进行了恒速引导分子动力学(SMD)模拟,以模拟CX - 1穿过双层的渗透。在低于0.0075 nm ps⁻¹的拉动速度下,观察到了氯的运输。用加权直方图分析方法计算的平均力势(PMF)表明,这种移动载体穿过膜的势垒约为58 kJ mol⁻¹。