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钙-钠离子通道家族中离散选择性带的能量学及突变诱导的转变

Energetics of discrete selectivity bands and mutation-induced transitions in the calcium-sodium ion channels family.

作者信息

Kaufman I, Luchinsky D G, Tindjong R, McClintock P V E, Eisenberg R S

机构信息

Department of Physics, Lancaster University, Lancaster LA1 4YB, United Kingdom.

Department of Physics, Lancaster University, Lancaster LA1 4YB, United Kingdom and Mission Critical Technologies Inc., 2041 Rosecrans Ave. Suite 225 El Segundo, California 90245, USA.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov;88(5):052712. doi: 10.1103/PhysRevE.88.052712. Epub 2013 Nov 19.

Abstract

We use Brownian dynamics (BD) simulations to study the ionic conduction and valence selectivity of a generic electrostatic model of a biological ion channel as functions of the fixed charge Q(f) at its selectivity filter. We are thus able to reconcile the discrete calcium conduction bands recently revealed in our BD simulations, M0 (Q(f)=1e), M1 (3e), M2 (5e), with a set of sodium conduction bands L0 (0.5e), L1 (1.5e), thereby obtaining a completed pattern of conduction and selectivity bands vs Q(f) for the sodium-calcium channels family. An increase of Q(f) leads to an increase of calcium selectivity: L0 (sodium-selective, nonblocking channel) → M0 (nonselective channel) → L1 (sodium-selective channel with divalent block) → M1 (calcium-selective channel exhibiting the anomalous mole fraction effect). We create a consistent identification scheme where the L0 band is putatively identified with the eukaryotic sodium channel The scheme created is able to account for the experimentally observed mutation-induced transformations between nonselective channels, sodium-selective channels, and calcium-selective channels, which we interpret as transitions between different rows of the identification table. By considering the potential energy changes during permeation, we show explicitly that the multi-ion conduction bands of calcium and sodium channels arise as the result of resonant barrierless conduction. The pattern of periodic conduction bands is explained on the basis of sequential neutralization taking account of self-energy, as Q(f)(z,i)=ze(1/2+i), where i is the order of the band and z is the valence of the ion. Our results confirm the crucial influence of electrostatic interactions on conduction and on the Ca(2+)/Na(+) valence selectivity of calcium and sodium ion channels. The model and results could be also applicable to biomimetic nanopores with charged walls.

摘要

我们使用布朗动力学(BD)模拟来研究生物离子通道通用静电模型的离子传导和价态选择性,该模型是其选择性过滤器处固定电荷Q(f)的函数。因此,我们能够将最近在BD模拟中揭示的离散钙传导带M0(Q(f)=1e)、M1(3e)、M2(5e)与一组钠传导带L0(0.5e)、L1(1.5e)进行协调,从而获得钠钙通道家族完整的传导和选择性带与Q(f)的模式。Q(f)的增加会导致钙选择性增加:L0(钠选择性、非阻塞通道)→M0(非选择性通道)→L1(具有二价阻断的钠选择性通道)→M1(表现出反常摩尔分数效应的钙选择性通道)。我们创建了一个一致的识别方案,其中L0带被假定与真核钠通道相关联。所创建的方案能够解释实验观察到的非选择性通道、钠选择性通道和钙选择性通道之间的突变诱导转变,我们将其解释为识别表中不同行之间的转变。通过考虑渗透过程中的势能变化,我们明确表明钙通道和钠通道的多离子传导带是共振无障碍传导的结果。周期性传导带的模式是基于考虑自能的顺序中和来解释的,即Q(f)(z,i)=ze(1/2+i),其中i是带的阶数,z是离子的价态。我们的结果证实了静电相互作用对钙通道和钠通道的传导以及Ca(2+)/Na(+)价态选择性的关键影响。该模型和结果也可能适用于具有带电壁的仿生纳米孔。

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