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[DNA 核碱基的太赫兹光谱:胞嘧啶和胸腺嘧啶]

[Terahertz spectroscopy of DNA nucleobases: cytosine and thymine].

作者信息

Yan Hui, Fan Wen-Hui, Zheng Zhuan-Ping, Liu Jia

机构信息

State Key Laboratory of Transient Optics and Photonics, Xi'an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi'an 710119, China.

出版信息

Guang Pu Xue Yu Guang Pu Fen Xi. 2013 Oct;33(10):2612-6.

Abstract

The absorption features of DNA nucleobases cytosine and thymine were measured by terahertz time-domain spectroscopy (THz-TDS) from 0.1 to 3.5 THz. Our experimental results clearly show that these important biomolecules exhibit distinctive absorption features in THz region. To the best of our knowledge, the subtle absorption peak of cytosine at 2.53 THz is reported for the first time. Moreover, geometry optimizations and lattice dynamic calculations on cytosine crystal were also performed with the pseudo-potential plane wave method of density functional theory by taking periodic boundary conditions into account. All measured terahertz absorption features of cytosine were assigned successfully and its absorption spectrum was reproduced according to our calculations. Furthermore, our results show that absorption features of cytosine below 3.5 THz arise from external modes in translation and rotation motions, which are dominated by the intermolecular hydrogen bonds.

摘要

利用太赫兹时域光谱(THz - TDS)在0.1至3.5太赫兹范围内测量了DNA核碱基胞嘧啶和胸腺嘧啶的吸收特性。我们的实验结果清楚地表明,这些重要的生物分子在太赫兹区域呈现出独特的吸收特性。据我们所知,首次报道了胞嘧啶在2.53太赫兹处的微弱吸收峰。此外,还采用考虑周期性边界条件的密度泛函理论赝势平面波方法对胞嘧啶晶体进行了几何结构优化和晶格动力学计算。根据我们的计算,成功地归属了胞嘧啶所有测量到的太赫兹吸收特性,并重现了其吸收光谱。此外,我们的结果表明,胞嘧啶在3.5太赫兹以下的吸收特性源于平移和旋转运动中的外部模式,这些模式主要由分子间氢键主导。

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