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黄眉柳莺指名亚种(雀形目:莺科)的线粒体全基因组

Complete mitochondrial genome of Yellow-browed warbler Phylloscopus inornatus inornatus (Passeriformes: Sylviidae).

作者信息

Qing Hui, Liu Gang, Zhou Lizhi, Wang Jinghua, Li Lunyue, Li Bo, Olsson Urban

机构信息

a Institute of Biodiversity and Wetland Ecology, School of Resources and Environmental Engineering, Anhui University , Hefei , P.R. China .

b Anhui Biodiversity Information Center , Hefei , P.R. China , and.

出版信息

Mitochondrial DNA. 2015;26(6):939-40. doi: 10.3109/19401736.2013.863299. Epub 2014 Jan 10.

Abstract

Yellow-browed warbler Phylloscopus inornatus inornatus (Passeriformes: Sylviidae) is a small insectivorous leaf-gleaning bird which breeds in forests of the east Palaearctic. In this study, we used PCR-based method to determine the complete mitochondrial genome (mtDNA) of this warbler species. The complete mtDNA is a 16,875 bp circular molecule, containing 37 typical genes and an extra pseudo-control region. The gene order differs from the standard gene order in birds, but similar to genus Sylvia and Acrocephalus, which has the remnant CR2 gene order. All protein-coding genes start with a typical ATG codon. The termination codon is usually the standard TAA, but may be TAG (Cyt b and ND6), AGG (COI) or incomplete T-(COIII and ND4). All tRNAs have the typical clover-leaf structure, except the dihydrouridine (DHU) arm of tRNASer (AGN) and tRNALys (CUN), which forms a simple loop. The non-coding region contains some intergenic spacers, a control region and an extra pseudo-control region.

摘要

黄眉柳莺指名亚种(雀形目:莺科)是一种小型食虫性叶栖鸟类,在东古北区的森林中繁殖。在本研究中,我们使用基于PCR的方法来确定该柳莺物种的完整线粒体基因组(mtDNA)。完整的mtDNA是一个16,875 bp的环状分子,包含37个典型基因和一个额外的假控制区。基因顺序与鸟类的标准基因顺序不同,但与具有残余CR2基因顺序的西尔维亚属和苇莺属相似。所有蛋白质编码基因均以典型的ATG密码子开始。终止密码子通常是标准的TAA,但也可能是TAG(细胞色素b和ND6)、AGG(细胞色素氧化酶亚基I)或不完整的T-(细胞色素氧化酶亚基III和ND4)。除了tRNASer(AGN)和tRNALys(CUN)的二氢尿嘧啶(DHU)臂形成简单环外,所有tRNA都具有典型的三叶草结构。非编码区包含一些基因间隔区、一个控制区和一个额外的假控制区。

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