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与Xanthoria属和Caloplaca属(黄枝衣科,地衣化子囊菌)相关的地衣光合生物的LSU和SSU rDNA I组内含子的系统发育分析

Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera and (Teloschistaceae, lichenized Ascomycetes).

作者信息

Nyati Shyam, Bhattacharya Debashish, Werth Silke, Honegger Rosmarie

机构信息

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland Department of Radiation Oncology, University of Michigan, 109 Zina Pitcher Place, Ann Arbor, Michigan 48109, United States.

Department of Ecology, Evolution and Natural Resources and Institute of Marine and Coastal Science, Rutgers University, 59 Dudley Road, New Brunswick, New Jersey 08901, USA.

出版信息

J Phycol. 2013 Dec 1;49(6). doi: 10.1111/jpy.12126.

Abstract

We studied group I introns in sterile cultures of selected groups of lichen photobionts, focusing on species associated with s. lat. (including spp.; lichen-forming ascomycetes). Group I introns were found inserted after position 798 ( numbering) in the large subunit (LSU) rRNA in representatives of the green algal genera and . The 798 intron was found in about 25% of photobionts including several reference strains obtained from algal culture collections. An alignment of LSU-encoded rDNA intron sequences revealed high similarity of these sequences allowing their phylogenetic analysis. The 798 group I intron phylogeny was largely congruent with a phylogeny of the Internal Transcribed Spacer Region (ITS), indicating that the insertion of the intron most likely occurred in the common ancestor of the genera and The intron was vertically inherited in some taxa, but lost in others. The high sequence similarity of this intron to one found in suggests that the 798 intron was either present in the common ancestor of Trebouxiophyceae, or that its present distribution results from more recent horizontal transfers, followed by vertical inheritance and loss. Analysis of another group I intron shared by these photobionts at small subunit (SSU) position 1512 supports the hypothesis of repeated lateral transfers of this intron among some taxa, but loss among others. Our data confirm that the history of group I introns is characterized by repeated horizontal transfers, and suggests that some of these introns have ancient origins within Chlorophyta.

摘要

我们在选定的地衣共生光合生物无菌培养物中研究了I组内含子,重点关注与广义的s. lat.相关的物种(包括地衣形成子囊菌的物种)。在绿藻属和的代表物种的大亚基(LSU)rRNA中,发现I组内含子插入在第798位(编号)之后。在约25%的共生光合生物中发现了798内含子,包括从藻类培养物保藏中心获得的几个参考菌株。LSU编码的rDNA内含子序列比对显示这些序列高度相似,从而能够对其进行系统发育分析。798 I组内含子的系统发育在很大程度上与内部转录间隔区(ITS)的系统发育一致,这表明内含子的插入很可能发生在属和的共同祖先中。该内含子在一些分类群中垂直遗传,但在其他分类群中丢失。该内含子与在中发现的一个内含子高度序列相似,这表明798内含子要么存在于 trebouxioid绿藻纲的共同祖先中,要么其当前分布是由更近的水平转移导致的,随后是垂直遗传和丢失。对这些共生光合生物在小亚基(SSU)第1512位共享的另一个I组内含子的分析支持了该内含子在一些分类群中反复横向转移但在其他分类群中丢失的假说。我们的数据证实I组内含子的历史具有反复水平转移的特征,并表明其中一些内含子在绿藻门中有古老的起源。

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