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CAD 在恢复冈瓦纳区系事件和 Aciliini(鞘翅目:虎甲科)进化历史中的应用。

The utility of CAD in recovering Gondwanan vicariance events and the evolutionary history of Aciliini (Coleoptera: Dytiscidae).

机构信息

Department of Entomology, Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden.

出版信息

BMC Evol Biol. 2014 Jan 14;14:5. doi: 10.1186/1471-2148-14-5.

Abstract

BACKGROUND

Aciliini presently includes 69 species of medium-sized water beetles distributed on all continents except Antarctica. The pattern of distribution with several genera confined to different continents of the Southern Hemisphere raises the yet untested hypothesis of a Gondwana vicariance origin. The monophyly of Aciliini has been questioned with regard to Eretini, and there are competing hypotheses about the intergeneric relationship in the tribe. This study is the first comprehensive phylogenetic analysis focused on the tribe Aciliini and it is based on eight gene fragments. The aims of the present study are: 1) to test the monophyly of Aciliini and clarify the position of the tribe Eretini and to resolve the relationship among genera within Aciliini, 2) to calibrate the divergence times within Aciliini and test different biogeographical scenarios, and 3) to evaluate the utility of the gene CAD for phylogenetic analysis in Dytiscidae.

RESULTS

Our analyses confirm monophyly of Aciliini with Eretini as its sister group. Each of six genera which have multiple species are also supported as monophyletic. The origin of the tribe is firmly based in the Southern Hemisphere with the arrangement of Neotropical and Afrotropical taxa as the most basal clades suggesting a Gondwana vicariance origin. However, the uncertainty as to whether a fossil can be used as a stem-or crowngroup calibration point for Acilius influenced the result: as crowngroup calibration, the 95% HPD interval for the basal nodes included the geological age estimate for the Gondwana break-up, but as a stem group calibration the basal nodes were too young. Our study suggests CAD to be the most informative marker between 15 and 50 Ma. Notably, the 2000 bp CAD fragment analyzed alone fully resolved the tree with high support.

CONCLUSIONS

  1. Molecular data confirmed Aciliini as a monophyletic group. 2) Bayesian optimizations of the biogeographical history are consistent with an influence of Gondwana break-up history, but were dependent on the calibration method. 3) The evaluation using a method of phylogenetic signal per base pair indicated Wnt and CAD as the most informative of our sampled genes.
摘要

背景

目前,Aciliini 包括分布在除南极洲以外的各大洲的 69 种中型水生甲虫。几个属局限于南半球不同大陆的分布模式提出了尚未经过检验的冈瓦纳大陆分裂起源假说。Aciliini 的单系性受到了 Eretini 的质疑,并且关于该部落的属间关系存在相互竞争的假说。本研究是首次针对 Aciliini 部落进行的综合系统发育分析,它基于 8 个基因片段。本研究的目的是:1)检验 Aciliini 的单系性,阐明部落 Eretini 的位置,并解决 Aciliini 属内的关系,2)校准 Aciliini 内的分歧时间并测试不同的生物地理情景,3)评估基因 CAD 在水龟科系统发育分析中的效用。

结果

我们的分析证实了 Aciliini 的单系性,Eretini 是其姐妹群。具有多个物种的六个属也被支持为单系。该部落的起源牢固地建立在南半球,新热带和非洲热带分类群的排列是最基础的分支,表明冈瓦纳大陆分裂起源。然而,作为冠群校准,冈瓦纳大陆分裂的地质年龄估计包含在基部节点的 95% HPD 区间内,但作为一个茎群校准,基部节点太年轻。我们的研究表明,CAD 是 15 到 50 百万年前最具信息量的标记。值得注意的是,单独分析的 2000 个碱基对的 CAD 片段完全解决了具有高支持度的树。

结论

1)分子数据证实 Aciliini 是一个单系群。2)生物地理历史的贝叶斯优化与冈瓦纳大陆分裂历史的影响一致,但取决于校准方法。3)使用基于碱基对的系统发育信号的评估表明,Wnt 和 CAD 是我们采样基因中最具信息量的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2df0/3901756/3e9b60560d0d/1471-2148-14-5-1.jpg

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