Department of Marine Bio-Materials & Aquaculture, Pukyong National University, Busan 608-737, Republic of Korea.
Korea Institute of Ocean Science & Technology, Ansan 426-744, Republic of Korea.
Fish Shellfish Immunol. 2014 Mar;37(1):11-21. doi: 10.1016/j.fsi.2014.01.006. Epub 2014 Jan 13.
Two paralogue genes of warm-temperature-acclimation-associated 65-kDa protein were characterized and their mRNA expression patterns during various experimental stimulations were examined in the rockbream (Oplegnathus fasciatus; Perciformes). Rockbream Wap65 isoforms (rbWap65-1 and rbWap65-2) share basically common structural features with other teleostean orthologues and human hemopexin (HPX) at both amino acid (conserved cysteine and histidine residues) and genomic levels (ten-exon structure), although the rbWap65-2 reveals more homologous characteristics to human HPX than does rbWap65-1 isoform. Southern blot analysis indicates that each rbWap65 isoform exists as a single copy gene in the rockbream genome. Both rbWap65 genes were predicted to possess various transcription factor (TF) binding motifs related with stress and innate immunity in their 5ʹ-upstream regions, in which inflammation-related motifs were more highlighted in the rbWap65-2 than in rbWap65-1. Based on the RT-PCR assay, the liver-predominant expression pattern was more apparent in rbWap65-1 than rbWap65-2 isoform. During thermal elevation, clear upregulation was found only for the rbWap65-1. In contrast, immune stimulations (bacterial challenges, viral infection and iron overload) activated more preferentially the rbWap65-2 isoform in overall, although the inducibility was affected by the kinds of stimulators and tissue types. Taken together, our data suggest that the two paralogue rbWap65 isoforms have experienced subfunctionalization and/or neofunctionalization during their evolutionary history, in which the rbWap65-2 has retained closer, functional orthology to the human HPX while the rbWap65-1 have been diversified to be more related with thermal acclimation physiology.
两种与暖温驯化相关的 65kDa 蛋白的旁系同源基因被鉴定出来,并在石斑鱼(Oplegnathus fasciatus;鲈形目)中研究了它们在各种实验刺激下的 mRNA 表达模式。石斑鱼 Wap65 同工型(rbWap65-1 和 rbWap65-2)在氨基酸(保守半胱氨酸和组氨酸残基)和基因组水平(十个外显子结构)上与其他硬骨鱼同源物和人血影蛋白(HPX)基本具有共同的结构特征,尽管 rbWap65-2 与 rbWap65-1 同工型相比,更类似于人 HPX。Southern blot 分析表明,rbWap65 同工型在石斑鱼基因组中作为单个拷贝基因存在。rbWap65 基因均被预测在其 5'上游区域具有与应激和先天免疫相关的各种转录因子(TF)结合基序,其中炎症相关基序在 rbWap65-2 中比 rbWap65-1 中更为突出。基于 RT-PCR 分析,rbWap65-1 在肝脏中的表达模式比 rbWap65-2 更为明显。在热升高期间,仅发现 rbWap65-1 的明显上调。相比之下,在整体上,免疫刺激(细菌挑战、病毒感染和铁过载)更优先激活 rbWap65-2 同工型,尽管诱导性受到刺激物种类和组织类型的影响。总之,我们的数据表明,这两个旁系同源 rbWap65 同工型在其进化历史中经历了亚功能化和/或新功能化,其中 rbWap65-2 与人类 HPX 保持更密切的功能同源性,而 rbWap65-1 则多样化与热适应生理更为相关。